RNA id: TU248227


Basic Information

Item Value
RNA id TU248227
length 2272
lncRNA type inter_gene
GC content 0.40
exon number 5
gene id G183263
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 9532546 ~ 9543226 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTGAATGACTGACAGCAGTTGGTGACAGAGCTACAGTGGAGTCAAGCAGCATACAATGTAAGTTAGGAAAACCCTGtattatatttgtttgtttgcttgattGTTTATCACTATGGTTCTTTGTGAACAAtatgttcatttaaaaacatatatgCTGGACTTCAACATGTGAGATGCTGTATGTTGACTGGATATACATTGGATTGTACAGTAtctaatggagaaaaaaaatggattgTAAAGAAATTCACATTCAGCCTATATACCCGCTTTGTTTGGACATGAATTCTGCTTTTTCAACGTGTGTGTGCCCACTTTGTTGATCCTTTTGGTGCAGTTTTGCCTTTCTTTTACAGAACACTATAGGACAATGGCTCCAGTAGGGACGGTTGGCATGTTGGGTTGGGTTTCATCGACAGAGGTGGGTGTCATCTCCCTGGTCGTCTTCCTCGTCCTCAGCGTCGCTCTCCTCGCCCTTTGCACCATGTGTCAGAGGAAAACTGCCAACGCGTATTCTGTGAACCAAACAACGACTGATGGAAAGGGAAGAGCCAATGGGAACACTGACACAAGGATGGGAGACTCAGGGACATCATGGAGAACCCACCAACTGCCTGCCAGCACACTGGAGAGAGCTACAGCATCAACCAACTAACCAAACACCAGCTTTCCACACTTGACTTCGTCCCAAATGGACAGATGGacggaaaaaaagaggaagggcAGGAGGGAACGTTGGCCCTGTCCTCTGCCAGCTCCACACCTTGTCTTCATCACATCAGTCTTCACTTCTATCTGGATAGAGTCCCTCAGTTCTGGATTCTGAATTAATCTAAACAAGAACTTTCTATCTACGTCTTTGAGTATTTTACAATATGCTTTTTTAAAGAGTTTggattctgtttttattcttttccaGTTAGGAAATGAATACTCCCTACTGTTAAGTGAAtccgataaaaaaaaaaaatgaaattaccATAAAGAGTTCACCTGAGTAGAATAAACTTTTAGCTTGTTTGCTTCAAATAACATTTACTTATTAGtacgacattttgggaaatatgcttattggCTTTCTTGCGGAGAAGATCGGTACTATCACTCTCATGTGTCCGTTAAATATGATGCTACAGCTAGGAGAGTTATGGCGCGTTCCATTTCAACTGGGAAGTCTGAATTTAAGAGTTCCAAGTCAGAAATTTCAACTGGAAAGCCCCCCCCCTTGAAGTCAGATTTCCGACTTGAAAAGTCGGAGAACCTCACTATATTCCGACCAAAGCCAACCTCATAGCGGCATGTCGGAATAGAAGCACGTCGGAGTGGCGGCATgtcggactggcagcatgtaaccaGGCTAAGCTAACAGACTGCCGGCTGTACCTTCACATTTAACCAACAGATATAAAAGTGGTATCAATTTaatcatctaactcttggcaagcaAGCGAATAACATAAAATATCCTTTAGTATTTTTGCCAGCCGTTTTCAAACTACTGCATACTATGAAGTTTAGATTATAGGATGATGTGTCCATCAGGCAGCCTaccatgtaaaaataaatgcacaGATTCTGGAAACTGGCTTGAAGTTTGTAATCCATCGTAGTGAACATCAAGTCATGTCTGCTGACTAAGTTTCAAGCGACTTTGAGTtcttgaaaagtgctatataaattcaatttattattattattattattattattattattattaagtttcATACTGTGGGGAAATAAATGGCTAGAACACAACTACACGCTTAGCAAAGTGGTTGCCAAAAATGTAAGGTATATAAGAAAGCATGCAAACACACTGGTATGGTCCTTTTTCATATACTATTAAATGACACTGTTGCACTGTTGTGCTGGATGGGAAAAGATCATGGAGGAGGAGACTTTTGGTTATTTAGCTAGGCTACTGTATGTGTCAACACTGATAAATTGTGATAAGAGGGGACTTTTCTAACTTGTTGACCTTTCACGATCAAGGAAGCGATGAaccttctgtttgtgtttgttctttTCTATTCTTGTCTTTGTGTTCCATTTTCTCCCGGTGGGGCAGGTAAAGTCTATGCTGTAGTATTATCTTCATTGTAAACATGTATGGCATTCATGATACTTGTGGGTCTGTTTGTCctgaaacaaagacaagaaagaccagaatgtttataaaaaaaataaataaataaaaaaaaaaagccatcctTATCTTCCCTGGTTGACTGTGATGAGATGGGAGTGGCACCCGGACTTACTGACACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248219 lncRNA downstream 27174 9501912 ~ 9505372 (-) True G183258
TU248217 lncRNA downstream 39142 9493179 ~ 9493404 (-) True G183256
TU248155 lncRNA downstream 204023 9327400 ~ 9328523 (-) True G183213
TU248156 lncRNA downstream 205258 9325247 ~ 9327288 (-) True G183214
TU248131 lncRNA downstream 298748 9233511 ~ 9233798 (-) True G183189
TU248264 lncRNA upstream 143496 9686722 ~ 9687119 (-) True G183296
TU248268 lncRNA upstream 165827 9709053 ~ 9715339 (-) True G183298
TU248269 lncRNA upstream 173364 9716590 ~ 9718205 (-) True G183299
TU248291 lncRNA upstream 286650 9829876 ~ 9846858 (-) True G183317
XR_005636844.1 lncRNA upstream 391961 9935187 ~ 9938482 (-) False LOC120546255
XM_039781901.1 mRNA downstream 5118 9505432 ~ 9527428 (-) False znf395b
XM_039781899.1 mRNA downstream 5118 9505432 ~ 9527428 (-) True znf395b
XM_039781895.1 mRNA downstream 62029 9466354 ~ 9470517 (-) False si:ch211-63o20.7
XM_039781893.1 mRNA downstream 62031 9460778 ~ 9470515 (-) True si:ch211-63o20.7
XM_039782254.1 mRNA upstream 6778 9550004 ~ 9556929 (-) False paqr8
XM_039782253.1 mRNA upstream 6778 9550004 ~ 9556929 (-) True paqr8
XM_039782710.1 mRNA upstream 60262 9603488 ~ 9622711 (-) True stmn4
XM_039782325.1 mRNA upstream 310514 9853740 ~ 9855384 (-) True LOC120546991
XM_039782467.1 mRNA upstream 401639 9944865 ~ 9945741 (-) True LOC120547068
TU248116 other downstream 399074 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 745329 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 1507502 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 1766160 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 2499144 7033330 ~ 7033402 (-) True trnak-uuu_21
TU248390 other upstream 556377 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 958694 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 977491 10520717 ~ 10521410 (-) True G183528
TU248695 other upstream 1830882 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 3039943 12583169 ~ 12583241 (-) True trnat-ugu_2

Expression Profile