RNA id: TU248535


Basic Information

Item Value
RNA id TU248535
length 694
RNA type TUCP
GC content 0.47
exon number 1
gene id G183528
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10520717 ~ 10521410 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCACTGTTCAAACCATTATTCGAAAATGGAAAGAGTATGGCAAAACTGCAAACCTACCAAGACATGGCCGTCCACGTAAACTGACAAGCCGGGCAAGGAGAGCATTGATCAGAGaagcagccaagaggcccatggtaactctggaggagctgcagagatCCACAGCTCAGGTGGGAGAATCTGTCCACAGGACAACTATTAGTTGTGCACTCCACAAATcgggcctttatggaagagaaaagaaagccaTTGTTGAAAGAAAGCCATAAAAAGTCCCGTTTGCAGTTTGCCACAAACCATGTGAGGGACACAGCAAACATGTGgaggaaggtgctctggtcagatgacaCCAAAATTGAAGTTTTTGGCCTAAATGCTAAACGCTTTGTATGGCGAAAAACTAACACTGCACATCACCcagaacacaccatccccaccgTGAAatatggtggtggcagcatcatgctgtgggggtgcttttcttcagcagggacagggaaacTGGTCAgagttgatgggaagatggatggagccaaatacagggcAATCTTAGAAGAAAACCTGTTagagtctgcaaaagacttgagactggaGCGGAGGTTCACCCTCCAGCGGGACAGCGACCCTAAACATACAGCCAGagctacaatggaatggtttagttcaaaacatatttgtgtgttagaatggcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248503 lncRNA downstream 287149 10220918 ~ 10233568 (-) True G183497
TU248497 lncRNA downstream 303591 10216351 ~ 10217126 (-) True G183492
TU248447 lncRNA downstream 343148 10176900 ~ 10177569 (-) True G183457
TU248448 lncRNA downstream 345362 10174736 ~ 10175355 (-) True G183458
XR_005637025.1 lncRNA downstream 454431 10064593 ~ 10066286 (-) True LOC120547073
TU248537 lncRNA upstream 36077 10557487 ~ 10558119 (-) True G183530
TU248538 lncRNA upstream 44506 10565916 ~ 10566164 (-) True G183531
TU248541 lncRNA upstream 69670 10591080 ~ 10591338 (-) True G183534
TU248626 lncRNA upstream 233586 10754996 ~ 10780282 (-) True G183594
TU248658 lncRNA upstream 426406 10947816 ~ 10948114 (-) True G183616
XM_039782068.1 mRNA downstream 71307 10398802 ~ 10449410 (-) False fam49a
XM_039782069.1 mRNA downstream 71307 10398802 ~ 10449410 (-) False fam49a
XM_039782067.1 mRNA downstream 71307 10398802 ~ 10449410 (-) True fam49a
XM_039782064.1 mRNA downstream 141590 10348141 ~ 10379127 (-) False fzd3a
XM_039781965.1 mRNA upstream 81060 10602470 ~ 10610625 (-) True LOC120546776
XM_039782864.1 mRNA upstream 140707 10662117 ~ 10666300 (-) True sf3b6
XM_039780998.1 mRNA upstream 172429 10693839 ~ 10708837 (-) True pla2g7
XM_039780999.1 mRNA upstream 172429 10693839 ~ 10708835 (-) False pla2g7
XM_039781001.1 mRNA upstream 203060 10724470 ~ 10728525 (-) True glrx5
TU248390 other downstream 419656 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 1387245 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 1733500 8783788 ~ 8787217 (-) False LOC120546397
TU247804 other downstream 2495673 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 2754331 7761565 ~ 7766386 (-) True G182952
TU248695 other upstream 852698 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 2061759 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 2439088 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 2672667 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 2684897 13206307 ~ 13215824 (-) False hmgn3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU108786 True 1244 TUCP 0.44 2 CI01000016 4272636 ~ 4273905 (+)
grasscarp (Ctenopharyngodon idella) TU342923 True 431 lncRNA 0.53 3 CI01000090 693921 ~ 696641 (+)
rainbow trout (Oncorhynchus mykiss) TU108786 True 331 lncRNA 0.39 1 NC_048565.1 88502986 ~ 88503316 (+)
striped catfish (Pangasianodon hypophthalmus) TU60979 True 3945 TUCP 0.39 2 NC_047597.1 23447908 ~ 23454217 (-)
tiger barb (Puntius tetrazona) TU108786 False 1535 lncRNA 0.47 2 NC_056708.1 349308 ~ 397101 (+)
mexican tetra (Astyanax mexicanus) TU342923 True 2235 lncRNA 0.37 2 NW_019171411.1 351275 ~ 353565 (+)