RNA id: TU248663



Basic Information


Item Value
RNA id TU248663
length 218
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G183621
representative True

Chromosome Information


Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 10963832 ~ 10964049 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


GAGACACTAGTTAGCTAAGCTTGGAAACGATTTAAGTGGAAAAACAAAGCTAAAGAGGTGTAGCCACACTACAGCACTTTTCCTGTCTAACAGCAGTGGTTTAGAACAAACGTTGTGCTAGTGTGcctggctaaagttggagctaacggactagctaaagttggagctaactgactagctaaagttggagctaacggcGGAGAGTTGCTGGTTCGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU248658 lncRNA downstream 15718 10947816 ~ 10948114 (-) True G183616
TU248626 lncRNA downstream 183550 10754996 ~ 10780282 (-) True G183594
TU248541 lncRNA downstream 372494 10591080 ~ 10591338 (-) True G183534
TU248538 lncRNA downstream 397668 10565916 ~ 10566164 (-) True G183531
TU248537 lncRNA downstream 405713 10557487 ~ 10558119 (-) True G183530
TU248683 lncRNA upstream 225605 11189654 ~ 11210793 (-) True G183639
TU248701 lncRNA upstream 482926 11446975 ~ 11447319 (-) True G183656
TU248718 lncRNA upstream 536032 11500081 ~ 11500653 (-) True G183665
TU248735 lncRNA upstream 572222 11536271 ~ 11537451 (-) True G183682
TU248740 lncRNA upstream 576465 11540514 ~ 11544065 (-) True G183685
XM_039781001.1 mRNA downstream 235307 10724470 ~ 10728525 (-) True glrx5
XM_039780998.1 mRNA downstream 254995 10693839 ~ 10708837 (-) True pla2g7
XM_039780999.1 mRNA downstream 254997 10693839 ~ 10708835 (-) False pla2g7
XM_039782864.1 mRNA downstream 297532 10662117 ~ 10666300 (-) True sf3b6
XM_039781965.1 mRNA downstream 353207 10602470 ~ 10610625 (-) True LOC120546776
XM_039782719.1 mRNA upstream 582137 11546186 ~ 11548350 (-) True LOC120547228
XM_039781328.1 mRNA upstream 611424 11575473 ~ 11576057 (-) True LOC120546403
XM_039781838.1 mRNA upstream 655655 11619704 ~ 11634330 (-) True LOC120546716
XM_039782501.1 mRNA upstream 674797 11638846 ~ 11650060 (-) True LOC120547092
XM_039781106.1 mRNA upstream 695945 11659994 ~ 11673089 (-) True kcnk13b
XR_005636937.1 other downstream 353207 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other downstream 442422 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 862771 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 1830360 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 2176615 8783788 ~ 8787217 (-) False LOC120546397
TU248695 other upstream 410059 11374108 ~ 11374615 (-) True G183650
unassigned_transcript_1080 other upstream 1619120 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 1996449 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 2230028 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 2242258 13206307 ~ 13215824 (-) False hmgn3

Expression Profile