RNA id: TU248695


Basic Information

Item Value
RNA id TU248695
length 508
RNA type TUCP
GC content 0.43
exon number 1
gene id G183650
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11374108 ~ 11374615 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttttaacaaataaaaaactgaaaaagtgggcgtgcaaaattattcagcccctttactttcagtgcagcaaactctctccagaagttcagtgaggatctttgaatgatccaatgttgacctaaatgactaatgatgataaatagaatccagctgtgtgtaatcaagtctccgtataaatgcacctgctctgtgatagtctcagaggtccgtgtaaagcgcagagagcatcatgaagaacaaggaacacaccaggcaggtccgagatactgttgtggagaagtttaaagccggatttggatacaaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactacaaatctacgaagacccggccgtccctctaaactttcagctcatacaatgagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatctacagctgaggtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248683 lncRNA downstream 163315 11189654 ~ 11210793 (-) True G183639
TU248663 lncRNA downstream 410059 10963832 ~ 10964049 (-) True G183621
TU248658 lncRNA downstream 425994 10947816 ~ 10948114 (-) True G183616
TU248626 lncRNA downstream 593826 10754996 ~ 10780282 (-) True G183594
TU248541 lncRNA downstream 782770 10591080 ~ 10591338 (-) True G183534
TU248701 lncRNA upstream 72360 11446975 ~ 11447319 (-) True G183656
TU248718 lncRNA upstream 125466 11500081 ~ 11500653 (-) True G183665
TU248735 lncRNA upstream 161656 11536271 ~ 11537451 (-) True G183682
TU248740 lncRNA upstream 165899 11540514 ~ 11544065 (-) True G183685
TU248796 lncRNA upstream 211421 11586036 ~ 11590560 (-) True G183720
XM_039781001.1 mRNA downstream 645583 10724470 ~ 10728525 (-) True glrx5
XM_039780998.1 mRNA downstream 665271 10693839 ~ 10708837 (-) True pla2g7
XM_039780999.1 mRNA downstream 665273 10693839 ~ 10708835 (-) False pla2g7
XM_039782864.1 mRNA downstream 707808 10662117 ~ 10666300 (-) True sf3b6
XM_039781966.1 mRNA downstream 763483 10455244 ~ 10610625 (-) False LOC120546776
XM_039782719.1 mRNA upstream 171571 11546186 ~ 11548350 (-) True LOC120547228
XM_039781328.1 mRNA upstream 200858 11575473 ~ 11576057 (-) True LOC120546403
XM_039781838.1 mRNA upstream 245089 11619704 ~ 11634330 (-) True LOC120546716
XM_039782501.1 mRNA upstream 264231 11638846 ~ 11650060 (-) True LOC120547092
XM_039781106.1 mRNA upstream 285379 11659994 ~ 11673089 (-) True kcnk13b
XR_005636937.1 other downstream 763483 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other downstream 852698 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 1273047 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 2240636 9129573 ~ 9133472 (-) True G183176
TU247995 other downstream 2586891 8783788 ~ 8787217 (-) False LOC120546397
unassigned_transcript_1080 other upstream 1208554 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 1585883 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 1819462 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 1831692 13206307 ~ 13215824 (-) False hmgn3
TU249195 other upstream 1831692 13206307 ~ 13215824 (-) False hmgn3

Expression Profile