RNA id: TU248808


Basic Information

Item Value
RNA id TU248808
length 525
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G183732
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11658438 ~ 11658962 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagcgatctggcttaatactggaccagtgtcaaagattgttgttcccatcagtcacttagacactaaaacataggaaaatagggtccatattgaaaaaaaaactgtatttaccCTTTAAGAACAAATGTATAGGCATCTTCATTCTCTTTGTAAATGCATTTTAGTGGAAATTACATGGTGAGAATCCTCCAGGCTCCACCTCTGACATCACCAGCTGAGCTTTGGTATATCTGGATTAGGTGTGTTTGATTTCCAGAGAACAAGAGCAGAGAGACCATCTTCTTTGGTTTTATCTTGATAAAATGACAACCTAGCATGCATGCAAAGAAAGAATGTGCTGTGTTATCTTTTGTACAGTGTCAGACTCGGCATGATTTTTTAGCATGATTCCCAATGGTTGTAAGAATACTTTATCTGTGAGTCATCTGCTGCAAAatctttttcagtttacagCACAATCACAAAGAAGGCGTCGAGTTCCAGATGAAACGCAGCATTAATAAAGGTTAAACATTTGCAGAGTG

Function

GO:

id name namespace
GO:0006950 response to stress biological_process
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0033554 cellular response to stress biological_process

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248796 lncRNA downstream 67878 11586036 ~ 11590560 (-) True G183720
TU248740 lncRNA downstream 114373 11540514 ~ 11544065 (-) True G183685
TU248735 lncRNA downstream 120987 11536271 ~ 11537451 (-) True G183682
TU248718 lncRNA downstream 157785 11500081 ~ 11500653 (-) True G183665
TU248701 lncRNA downstream 211119 11446975 ~ 11447319 (-) True G183656
TU248810 lncRNA upstream 92 11659054 ~ 11659573 (-) True G183734
TU248823 lncRNA upstream 40090 11699052 ~ 11699965 (-) True G183747
TU248829 lncRNA upstream 88169 11747131 ~ 11747593 (-) True G183753
TU248866 lncRNA upstream 129039 11788001 ~ 11788321 (-) True G183781
TU248874 lncRNA upstream 208199 11867161 ~ 11869156 (-) True G183788
XM_039782501.1 mRNA downstream 8378 11638846 ~ 11650060 (-) True LOC120547092
XM_039781838.1 mRNA downstream 24108 11619704 ~ 11634330 (-) True LOC120546716
XM_039781328.1 mRNA downstream 82381 11575473 ~ 11576057 (-) True LOC120546403
XM_039782719.1 mRNA downstream 110088 11546186 ~ 11548350 (-) True LOC120547228
XM_039781001.1 mRNA downstream 929913 10724470 ~ 10728525 (-) True glrx5
XM_039781106.1 mRNA upstream 1032 11659994 ~ 11673089 (-) True kcnk13b
XM_039782028.1 mRNA upstream 234572 11893534 ~ 11918141 (-) True tshr
XM_039781091.1 mRNA upstream 368586 12027548 ~ 12358231 (-) False nrxn3b
XM_039781084.1 mRNA upstream 368586 12027548 ~ 12358230 (-) False nrxn3b
XM_039781082.1 mRNA upstream 368586 12027548 ~ 12358230 (-) False nrxn3b
TU248695 other downstream 283823 11374108 ~ 11374615 (-) True G183650
XR_005636937.1 other downstream 1047813 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other downstream 1137028 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 1557377 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 2524966 9129573 ~ 9133472 (-) True G183176
unassigned_transcript_1080 other upstream 924207 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 1301536 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 1535115 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 1547345 13206307 ~ 13215824 (-) False hmgn3
TU249195 other upstream 1547345 13206307 ~ 13215824 (-) False hmgn3

Expression Profile