RNA id: TU248874


Basic Information

Item Value
RNA id TU248874
length 1996
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G183788
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 11867161 ~ 11869156 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACTGGAAGACAATACATCACATAAACATCATTGCAGTTTTTcagaaaatggaaaacaaaataaaacaacatttatatattttttgccacGGTATTGGACAACGTTGATATTTACATGTAGTGATGAAATAGGTCTTGAAATCATTCTTTGGCAATATGATTGCACAATAAGGAGAGAATTGAACATTTACTGTAAAAAGAAACCGACACCCGGGGTGCACTCTGCGTCACATCTCACAGATCAATAACAGTTTTGCATTTTGACATCTCTATAACCTATGGCTTTCCAAAAAATTCAGCTCAGACAGtcaccaaatttaaaaaaaaaaaaaaataatggcagTATTGTAGATCATTTTGTCAGAGAGAAaccaaaaacagaaaatgagcataaaaacatcaacataaaaaaatggcaactgtattttaaaaaatttttttttttaaatttaaatttttttgagcGTTTCATTGTATATGTTTGGCAGGTTTGAAACAAACACTTGTTTTAGGGGGCTTTTTCAGGCAGTGAAGTTTCCTTCTTTGCTTTAAAATGTCCAAggtatatattatatgtgttgCTCTGATTTTTCCAGGACTCGTAGGTCAGGAGTTCATCTTCCCTGCATGTCATTGGGTGagtcagagaaaaaaaataaaaaaataaaataaaaaggtggtTGCTAAAGCAACACATTCTCCCCTCCACATGCCTCTTGCCAGCTGAACACGTTATTAGTCACCACAACAGTGGGTTGTTGCTGCGAATACAGCGGAGTGCTTGACCCGGGCCGCGGGAGCACTCAGACAGATATCAGACGAGACACGGATGGCACACAACAAGAACACTGACGGTGTCTCCttttagccttttttttaatatatgtcGGCATGGATACCATACAAAATGCATGCTACAGGTGGCAAAAGACTGTACCAGCGGATGGGACATGCATTTCTTTGCCTGCTTGGCTCGCTTGACAATCACTCAACGTCTAttgagcttaaaaaaaaaaaaaaaaaaaataaaaatcttgtCTGACTGCTGCTACAACCAAACCCAGCCTATGTTTGTTCCTACAAAGCTGCTTTTTTTATATGGACTGCATCTCTGCAAGTGGAGGGGGGTGTTGGGGGGCGGGGGATTAATACTTTTATGCATTCCTGTTTCACCAAAAGCATGCCGAGTAATGGCAGTGCAGAATTCATATCACTTCTGATGCAAAAATGTCAAAGCTCGCTACTGCCCTCGTGGATTTCAATCAAGTCAGTGTTTTCATGACATACACCTACAACTGTGTAGAGTGGCAAAAtctatttaaaagaaaagaaaataataccCGTCTGATCTCCAGATTGGGCACTTGAGATACATATGTATGCAAGCTTGACATCCACGACGGGAAGTAATTCCTTTAATCAAAGGGTTaacaatactgtatgtaaataataataaaaaaacgttgtttttttttttttgtcatttatgcCATCTCCTAcattcctctttcttttcaatCCAACTCTTAAGTAGCCTATTAGGAGATATGAGGTTCTTTCCGGACAGCCCGTCTAATCCATAAATTTACACTGAACAATGTCGATGGAAAATAAGGACAcgtgtacatttacacacaggagaaagaaaaaaataaaaaataaagaagaaacaATACTGTTATAAATAAAGACAAGAAAACGTTCTGTCTAAACATGTCATAGACATGACAACAGAGGTACTgagggcaggcaggcaggcacaaTGTTAAAGGGTGTGTGTTCCTggacacacaaactcacacacacacacacacacacacacacacacacacacacacacacacactctacacatGTGTTCTGAAATAACACTGGGGTTAAACACTGAACACCTAAAAATCACTGTACAGGCAGAAGAAGACGGAAGCCCACCCCTAAGAGGTGATTCAGCTGGCCTACATGTAGCCTGAACCCGAAGCCCAGAGGTGGCACCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248866 lncRNA downstream 78840 11788001 ~ 11788321 (-) True G183781
TU248829 lncRNA downstream 119568 11747131 ~ 11747593 (-) True G183753
TU248823 lncRNA downstream 167196 11699052 ~ 11699965 (-) True G183747
TU248810 lncRNA downstream 207588 11659054 ~ 11659573 (-) True G183734
TU248808 lncRNA downstream 208199 11658438 ~ 11658962 (-) True G183732
TU248878 lncRNA upstream 15421 11884577 ~ 11886506 (-) True G183792
TU248899 lncRNA upstream 133561 12002717 ~ 12017897 (-) False G183813
TU248901 lncRNA upstream 133561 12002717 ~ 12025499 (-) True G183813
TU248977 lncRNA upstream 611377 12480533 ~ 12480930 (-) True G183870
TU248979 lncRNA upstream 635529 12504685 ~ 12505015 (-) True G183872
XM_039781106.1 mRNA downstream 194072 11659994 ~ 11673089 (-) True kcnk13b
XM_039782501.1 mRNA downstream 217101 11638846 ~ 11650060 (-) True LOC120547092
XM_039781838.1 mRNA downstream 232831 11619704 ~ 11634330 (-) True LOC120546716
XM_039781328.1 mRNA downstream 291104 11575473 ~ 11576057 (-) True LOC120546403
XM_039782719.1 mRNA downstream 318811 11546186 ~ 11548350 (-) True LOC120547228
XM_039782028.1 mRNA upstream 24378 11893534 ~ 11918141 (-) True tshr
XM_039781091.1 mRNA upstream 158392 12027548 ~ 12358231 (-) False nrxn3b
XM_039781084.1 mRNA upstream 158392 12027548 ~ 12358230 (-) False nrxn3b
XM_039781082.1 mRNA upstream 158392 12027548 ~ 12358230 (-) False nrxn3b
XM_039781098.1 mRNA upstream 158392 12027548 ~ 12358230 (-) False nrxn3b
TU248695 other downstream 492546 11374108 ~ 11374615 (-) True G183650
XR_005636937.1 other downstream 1256536 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other downstream 1345751 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 1766100 10099603 ~ 10101061 (-) False LOC120546281
TU248116 other downstream 2733689 9129573 ~ 9133472 (-) True G183176
unassigned_transcript_1080 other upstream 714013 12583169 ~ 12583241 (-) True trnat-ugu_2
TU249125 other upstream 1091342 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 1324921 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 1337151 13206307 ~ 13215824 (-) False hmgn3
TU249195 other upstream 1337151 13206307 ~ 13215824 (-) False hmgn3

Expression Profile