RNA id: XM_039781119.1


Basic Information

Item Value
RNA id XM_039781119.1
length 267
RNA type mRNA
GC content 0.44
exon number 2
gene id ost4
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 12907302 ~ 12908747 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGTGACGGACGTGCAGCTGGCCATATTCGCCAACATGCTTGGCGTGTCATTGTTCCTGCTGGTTGTGTTGTATCACTATGTTGCTGTCAATAACCCCAAGAAGCTGGAGTAGAGTCCCACCCAATATGGTCGGAGAGGTGAGATGGGACTCAATGCCATCACCATGGAAACAACATTCCCCACTTCCAGTCCCAAGAGATGAATTTCTTTGTAAGATTGCACAgtagtgtttttttctaataataaaaaaaaaaatgtgtatgcC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636849.1 lncRNA downstream 21527 12884370 ~ 12885775 (-) True LOC120546274
TU249054 lncRNA downstream 276510 12588138 ~ 12630792 (-) True G183910
TU249051 lncRNA downstream 280596 12592618 ~ 12626706 (-) True G183908
TU249036 lncRNA downstream 347527 12540583 ~ 12559775 (-) False G183898
TU249037 lncRNA downstream 347527 12557510 ~ 12559775 (-) True G183898
TU249160 lncRNA upstream 126450 13034252 ~ 13034497 (-) True G183981
TU249196 lncRNA upstream 237662 13145464 ~ 13215824 (-) True hmgn3
TU249225 lncRNA upstream 341789 13249591 ~ 13250436 (-) True G184026
TU249235 lncRNA upstream 348184 13255986 ~ 13257962 (-) False runx2b
TU249249 lncRNA upstream 410686 13318488 ~ 13318930 (-) True G184049
XM_039781113.1 mRNA downstream 159564 12746386 ~ 12747738 (-) False LOC120546273
XM_039781112.1 mRNA downstream 159564 12746386 ~ 12747738 (-) True LOC120546273
XM_039781288.1 mRNA downstream 204118 12695937 ~ 12703184 (-) True ccnk
XM_039781289.1 mRNA downstream 204322 12695937 ~ 12702980 (-) False ccnk
XM_039781099.1 mRNA downstream 549071 12032317 ~ 12358231 (-) False nrxn3b
XM_039782683.1 mRNA upstream 39156 12946958 ~ 12948322 (-) True LOC120547205
XM_039782685.1 mRNA upstream 48671 12956473 ~ 12957811 (-) False LOC120547206
XM_039782684.1 mRNA upstream 48671 12956473 ~ 12957811 (-) True LOC120547206
XM_039782688.1 mRNA upstream 53848 12961650 ~ 12963019 (-) False LOC120547209
XM_039782689.1 mRNA upstream 53848 12961650 ~ 12963016 (-) False LOC120547209
unassigned_transcript_1080 other downstream 324061 12583169 ~ 12583241 (-) True trnat-ugu_2
TU248695 other downstream 1532687 11374108 ~ 11374615 (-) True G183650
XR_005636937.1 other downstream 2296677 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other downstream 2385892 10520717 ~ 10521410 (-) True G183528
TU248390 other downstream 2806241 10099603 ~ 10101061 (-) False LOC120546281
TU249125 other upstream 52696 12960498 ~ 13007868 (-) True LOC120547209
TU249198 other upstream 286275 13194077 ~ 13215824 (-) False hmgn3
TU249194 other upstream 298505 13206307 ~ 13215824 (-) False hmgn3
TU249195 other upstream 298505 13206307 ~ 13215824 (-) False hmgn3
TU249197 other upstream 298505 13206307 ~ 13215824 (-) False hmgn3

Expression Profile