RNA id: TU249197


Basic Information

Item Value
RNA id TU249197
length 1892
RNA type TUCP
GC content 0.45
exon number 7
gene id hmgn3
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13145464 ~ 13215900 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACATATTATCGAAGGTGCTTAGATATTGATCCTGTATTTCGGGGTAGTTCAAATTCGCCTCTACTGGACCTTCGGGTTTGACCTTAATCTTTCCGTGCTTGGTGGAGAATAATTGACGCGTAAAAATGCCGAAGAGAAAGTCTCCAGAGGGACCTGAGGGCAAGGAGGCCTCCAAAGTCACAAAGCAAGAGCCCCCCAGAAGGTCACAGAGATTGTCAGCGAAACCTGCTCCACCCAAGTCTGAGGCCAAGCCCAAGAAGGCCATCGTCAAGAAGGTGGCAGACGATAAGGGGGCGAAGGCAAAGAAAGGCGGCGCTAAGGGTAAGAAGGATGACGGCCCCGCCCAGAACGGAGAGACCAAGACCAATGAGatctacGTGTCTCGTCCGTCTGTCAGAGTGTCTTCCAACAGAAGCATGGCTCCCTCCTTGATGTCAGTGAGAGGGCAGAGTGAGACAGTCAGAGTTAAGGGTAACTGAAGCAGCGGAGGAGGCGACTGAGGAGAAGGCGTAAAGACACGGGCGCGTCCACCGACTCGTCCCCTCTGACTCCATGGCAGCAAAGCATCTTTTTTTACTGACGATTTTTGTACCATGCTGAATTTTTTTTAGACTTGTGATAGTAGAGACGGACAACCAGCAGCCCCTTTTCCATATATTCACACTCCTTTTATCTCCCTTACCTACAGTATGTTTTGCCCGGAATTGTCCTTCCTCCTCCATTCTGTATCGCAGAAAGACAGAATGATGCGTTTGGCTGTGGTCGAATAAGTCTTTTTTTGCTTAGGAAGTTTCCTAACTGAGTGAAATGACCCGGAAGTATCTAAGTTGCAGCCATGATAAGAGCTTGTCGAATTCTCTAAATGCTAAGGAAAGTTGCTTTAATGCTTCATTTCTTATCTCCTTGAGGATAGGGAACACAGGACCATCCTTTACGAAAGGAAAGGAGATAATGCCGTCCCACAATTCGTTGTGGCAGCAACATTTAAGTGACACACCATTCGGCCATTCacgaaaacaaacacaacatggCCGACAAGGTACGCAAATTATCATGTAAGTTACTGTATATAGCCTGCTTGAAACAAAAAAGTAAGAACGCACAGGGCCAAGTATCTAAGATGCACTTTTAGTAGTCTATCTTCAGTACCGTTGTAGTTTCACCACGGCAGATCCGCGTCAGTAACATTCGCGGTTGCACTAATTACGTAGCCTAAGTGCAGTCGGATTCTCTGAGCACCACGGTTGGGATTTCCTAAGTCCTTTTGAATTCTCCTTCACATCTTTCTTTGACCTCATGACGTTTTCCATCGAGTTTTTGACTATTCGACCGCAACCTTTTTATCAGGCGGCTGCAGATGTTCTTTTACTTGCCTAAAGGGGGCCGTAAACAGGACTGTTATGATCTCTAAACCAGCTCTGCCATATTTGTAGTCTCTGAAAGATCATTATTGCGTTTGGCACTCTGACTAATTCCCCcctgatggttaaggtgaggacTTGTGGATGTATATCAGCAGTTCAGATGCAGAGCTACAAGAAACCAAGTTCATAGTCGCCATGGAGAACATCTGCAGCTTTTTAAAAAGATCTTAGTTTTTTAGAATCACCACCAGTGTTTCACTTAGCTCCTTTTGTACATGTGTGCCGGAGTGAATGTGTTTGTGGGTCTTTGTGTTTGACTTTATttcccattttatttttatttttacccccCTCCTGAGCGCCTTGTCCTGCAGCAGAGTGACATAGCAATAATGAGTGGTGCTTCTGTTCTAGACGGCTCTATTGGCTTTGGACCCTCTGGGCTTCTCTGAGTTTCATCCTGTTGGGAgaatattttgaaataaaaggaaaaagttGATGTCACGTGGcggtttttgtgtttttct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249160 lncRNA downstream 171810 13034252 ~ 13034497 (-) True G183981
TU249128 lncRNA downstream 283500 12841032 ~ 12922807 (-) True G183952
TU249130 lncRNA downstream 297560 12907315 ~ 12908747 (-) True ost4
XR_005636849.1 lncRNA downstream 320532 12884370 ~ 12885775 (-) True LOC120546274
TU249051 lncRNA downstream 579601 12592618 ~ 12626706 (-) True G183908
TU249225 lncRNA upstream 33767 13249591 ~ 13250436 (-) True G184026
TU249235 lncRNA upstream 40162 13255986 ~ 13257962 (-) False runx2b
TU249249 lncRNA upstream 102664 13318488 ~ 13318930 (-) True G184049
XR_005636829.1 lncRNA upstream 123359 13339183 ~ 13398575 (-) True LOC120546199
XR_005636830.1 lncRNA upstream 135314 13351138 ~ 13398575 (-) False LOC120546199
XM_039782213.1 mRNA downstream 3970 13148651 ~ 13202337 (-) False LOC120546943
XM_039782211.1 mRNA downstream 3970 13148651 ~ 13202337 (-) True LOC120546943
XM_039782212.1 mRNA downstream 3970 13149321 ~ 13202337 (-) False LOC120546943
XM_039782723.1 mRNA downstream 61213 13141455 ~ 13145094 (-) False si:dkey-261l7.2
XM_039782558.1 mRNA upstream 40061 13255885 ~ 13303784 (-) False runx2b
XM_039782555.1 mRNA upstream 40061 13255885 ~ 13303780 (-) False runx2b
XM_039782556.1 mRNA upstream 40061 13255885 ~ 13303780 (-) True runx2b
XM_039782557.1 mRNA upstream 40061 13255885 ~ 13286117 (-) False runx2b
XM_039782294.1 mRNA upstream 221246 13437070 ~ 13458215 (-) True mut
TU249125 other downstream 198439 12960498 ~ 13007868 (-) True LOC120547209
unassigned_transcript_1080 other downstream 623066 12583169 ~ 12583241 (-) True trnat-ugu_2
TU248695 other downstream 1831692 11374108 ~ 11374615 (-) True G183650
XR_005636937.1 other downstream 2595682 10501920 ~ 10610625 (-) False LOC120546776
TU249306 other upstream 242792 13458616 ~ 13468065 (-) True fkbp1b
TU249319 other upstream 266100 13481924 ~ 13491128 (-) False mfsd2b
TU249578 other upstream 1256377 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 1355931 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 2573090 15788914 ~ 15791558 (-) False si:dkey-177p2.18

Expression Profile