RNA id: XM_039782556.1


Basic Information

Item Value
RNA id XM_039782556.1
length 5387
RNA type mRNA
GC content 0.46
exon number 8
gene id runx2b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13255885 ~ 13303784 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGGAATCGCCCCTGTCTGTCGCTTCTATGAGAGCCAATTAAAGGTCAGTACAGGcttgcatgcatacatgcacacacacacacacacacacacacacacacacacatacacagttatTACAGTAATGACACAATAACATGACTACTGTTTGTGACACAGCAACAGAAAAAGTGTGAAACGGAAGATAAAAGCTTTCAAATTCAGGCTGAAAAGTGACACTGAAGCAGCTCTCGCACACTCCTCTGTAAATAAGCAGTTTCACACCACCTTCGCTTTCTctatacacacgcacgcacacacacacacacacacacacacagcctttctgtctctctctttccccattctctctgctgcacatgtatacacagacaaacacacacacatacacacccagtCTCACACCGCGAGCCAGCCAGCCATTCGCTCCTCACTCACACCCTCAAATCTTACCAAGCTCAGCTCTCCCTGCTCAGAGGCAGACAGGAGCAGCACAGCAGCCTGTTAAAGGAGTTGAGGGAAGGAGCAGCAGATTCAGAGAGAGACATATAAAGAGCGAGGGAGGGGGATGAAAGAGTGAAGGGAGAGCAAAGCAGAGAGAGCGCTGTTCCCCATATGCTGAGGAGGCATGGGCGGTTGAACAAGCTGCCCCCACTGAAGCCTCCTGACTCATGGGAGCGTCAGAACCCAATCCCCCAGAGAGCCTGCAAACGCTGTTGAACCACGCGtaagagagaaggaggggagccagagaggagagaaaaaaaaaaaaaaaaaagtcagaggagaggagagacgaGGGAAGAAAGCCACAACGGTAGGCTGTCCCACTCAACTGCTGTGCCGTGATGACATCAGAGGGCATGTGACCCAGGCTCTCCAGTGACGGCACATGGAGGGCAGGAAAGAGACGAGTTTTAAAGCTGGTGCCTTTTGGGTTGTGTGAGGGCTCTGCTCGCCTCCCAAACAACCACAGAACCACAGACGTGCGGCTCGGGGTTGGTGTTTGAGGGCGAAACCTGGAGTGTAAATGGTTAATCGTCGCGGGCCAGCACCAGTCACAAGGACGGCGCTAAGCGAGTAAGACGTGTCAAGGGTCACGGAAACCACAGAGGAACAAAAGTGGGACTTTCTGCAACCAGAGGCAGCTATGGCATCTAACAGCCTTTTCAGCACAGTGACACCATGTCAACAGAACTTCTTCTGGGATCCCAGCGCCAGTCGGAGGTTCAGTCCGCCGTCCAATAGCCTCCAGCCGGTCCCAGGGAAGATGAACGATGTGAACTCTCCAGGCGGGCAGCCCGACGCAGCGGCGGCGGTGCCAAGACTGCGCCCCCACGAAAACCGCAGCATGGCCGAGATCATCGCCGACCACCCGGCCGAGCTGGTCCGCACCGACAGCCCCAACTTTCTCTGCTCGGTCCTGCCCTCCCACTGGCGGTGCAACAAGACGCTGCCTGTCGCCTTTAAGGTGGTTGCCCTGGGAGACATACCTGATGGGACTGTTGTCACAGTAATGGCAGGCAACGACGAGAACTACTCCGCCGAGCTGCGGAACGCCTCGGGTGTGATGAAGAACCAAGTAGCCCGTTTCAACGATCTTCGCTTTGTGGGCCGCAGTGGCAGAGGCAAGAGCTTCACGCTGACAATCACAGTATTCACCAACCCACCACAAGTGGCAACTTACCACCGAGCCATAAAGGTCACCGTGGATGGACCGCGTGAGCCCAGGAGACATCGTCAGAAACTTGAGGACCCTCCCAAGACTGGTCTCTTCTCAGACCGCCTTAGTGAGCTTGAGAGGATGAGGGTGAGGGTGGCTGTTCCCATTCAAGGCCCCCGGCCAAATCTCAACACAGGGGCCAACTCCTTCAACCcgcagggacagacacagataaCAGACCCTCGTCAGTCCCAGTCCTCTCCTCCCTGGTCGTATGAACAGACGTACCCGTCCTACCTGAGTCCCATGGCGTCCCCCTCAGTCCACTCCACCACCCCCCTCTCCTCCAGCCGAGGCACGGGCCTGCCTGCCATCAGTGACGTGCCTAGACGATTGCCAGGTTCTTCTGACCTGAGCCCGTTCCCTGGTCAGTTTGAGCGTCAGTTCCCGGGCCTCTCGTCCCTCACAGAGAGTCGTTTCTCCAGCCCTCGGATGCACTACCCGGCCACGTTCACCTACACCCCGCCCGTCACCTCCGCCATGTCGCTGGGCAGCGCCCACTACCACACCTACCTTCCCCCTCCTTACCCGGGCTCCACCCAGAGCCAGAGCGGACCCTTCCAGACCAGCAGCACGCCCTATCTCTACTACGGCGCCTCGTCCGGCTCCTACCAGTTCTCCATGGTTCCCGGCGGGGATCGTTCGCCCTCCCGGATGATCCCGCCTTGCACTAGCGCCTCCACGGGCACCTCCCTGGTGAACCCCAACCTGCCCAGCCAGACGGAGGGAGGGGTGGACGGCGACGGAAGCCACAGTAACTCCCCGACTGTTCTCAACTCTGGAGGCCGCATGGATGAAGCTGTCTGGAGGCCATATTGAAGAACGCCAAAGGGGGCGGAGATTAGAAGTCAACTGATGTCATGGTTTGAAAGCACaaaacctttttcttttcttttttattgaaaagGGGATTTTTGAGCTCTCATCAGCTATCTCTACCTTTTTGCTTGGAAATTAAGGTtgagataaaacaaaacaaaaaaagaaaaaagaccaGACTTGTATGGACTAGTCTTCCTGGAATGTGTTTTGACCAAGGCACTACAAAGGGAGTCATTCTCACAGCAATAATGAGAAAGACAATTTTGGTTTATTCGGCCCAAGTGGATGAgacattatttcatttttattataatCCACAAGCGAAGGGATGCTTCAACAATATTTGTAAAAGACTGCCTCTTTTGTATAGTGTTTGTATTTCAATAAGGCTTTTTGCAGAGCATGTTTTTGTACTACGACAATATCAAGATGCAAGTTAGGCACTGAGTAGCAAGTGATGAGAGTAACACATATGTTACCTTAAGTGGTATGGACATTAAATTtgctttaaaaacaattaatttaacTTGTATATTGTGGGTGAAACGTTGATGTAGATTGAGGCGTTTTCTTAGTTTTAACTTATAAAGCCATAAATTATGTATTATATTTGAAACTTGAGTCAAAGAAGTGTAATCTGAATATTTTTGATGCATCTATATGACTaagttaaattgttttttttataggtAATTTAAGAGAGTGAgaggtttaattttttttttgtagtaccCAAAGATTTAAATCGTTTCGAATATGAAATGTAATTTCCAAAATGTTTTGCAACATGTTTCTTCTGGTGTAACTTTCAGTTGAACTGCTCCGCACGTCGAGAGCCCAACATCCTCGCTAGGCGTTGACACACATTTGGCTTAGAATTAAACCTCTGGTATTTATTGAGCAATAACTCGTATTGTGCCTTTTGGCAACGTACCATGAAAGAGAGCTTCAATAGGGAAAAATAATTACATGTTGGGGAAATTCTGCTTGATTTCTTCAGTTTGTGTAGTCTGACATGCGCCCAGATACCGTACATATGTATTTCCTTGTCCAAATAAGAAATGGTACATTTATATACAAACTGACATGTAGCCCACAGGTGATTCTGGCGCTGCCACGCCCAGCAGGTCAGACTTTAAGGTTCAGTTATTTTTTACGGTACATGAACTCCTCAGGACTGGATCTGAATCTCTGGATGATCTCAAATCCCACCGATTTTGGTAAATCTGCAATCTTCTTTTCATATCTAGTCCGGCTGAATCCTCAGTCTAGATTATAGGGAAAAATACGCCAAGGCTGTTCTAACTTTCATATCATGTGCAAAAGTTGGCTTTGAAAAAGTTTGTCTTAGTGTGTGACACACACGggtactttttttgtttgtttctttgcttttttttctccttcagtCTCTGAGACTGAAAAGGAAATATCACAGTTAGAGACAAAAGAGACTGTGACATTccttcagacatttatttattttcctccttttttttctgcttttgtcGGCCTGGTTTGGATCCTTACCGGTGTCACAAATCATGTGGCATGAGGGGAGGTCTGTTCATTTCCAATTTGAAATTACTATGTGAAATATAGTAAAGAAAACTGTTGCAGTTAAAGGAAAAAGTGCAAAAACCGAGGTGATTGGATGCAGCTGCTGGCAGCAAACTGGTAACCCAAAAATATGGGAGacttgtgtatgtttgtttcaTAAAGCACttatttcttgttttatttcTAGCAGCACTTACGGCAGGCTGCCAGCAGGGCTCGTGGTTTTGGTCCTCAGTGCAGATATAACGCCACTGGagtcacacacgcacgcacgcacgcacacatacacacacacacacacacgcacactcagaATGGATAACACTTGGCCAAACAAGCCATTTACATTGGAGTTGAATCTGATCTCACAAGGCAGTTGGTATttgtttggggaaaaaaaggcatttttcttGCTTTcatacaatatgatattcaGTACATGTAGGTAATATAATAACCCAATTTGAAAAAGCTGAGAAAAACATGGCCCTGTCCAAGGATCAGACTTCAAGCTTTCATTGAAGGTTTGCACGCAGTGCCTCTTTTCCAGTCTCTGCAGAGGATGTTCTGAACTCACTTAATGGAATCGAACATGTCACAGTACATTTCCCCAACTGCTTCAGCCCAAACGAAAAGTCTTTTTGCTGTTACAGTGTAACataagaaagcaaataaaaacctTTTAGATTGTTGTGATTTATAGCTTTTTTCCAATTACAAATTTATTCAATGTCTCCATAGTAACTATGCACATCTGttgggatttatttaatccGCTTCTTTCTGTCCAAACTTTGAACAGGAAATGgtcttttaaaaactgtttacacATCAATGCAGCACTGACATCCCATTTTGTCCTCATCTGCtttagtttgtgttgtgtttttcttcttcttcttcttcttcttcttcttctttttttctacagaAAACAAGAGGTTcgtccttttttttctttcctttggtTACATGTTGCGTACAAACTGTCACCAAAAACCTTGTTTCATTTAATGATCAACATGTATGATATCCAGGAACCATACCTTACCCTGCTCTTATGTAAAGTTGACTTGTTATGTCTATTGTTATGCTTCTTCTCTCATGAACACTTGTCAGGAAACTGAAACTAATGATTTTGCTGGTACGTTTCATATCATCAtcaagtgagtttttttttttataaagggaCAAACAGACCTGACAACAGTGAGTGAAATTGGCATTGTGAttgtacattttgtttattttaagaaTAAAATAGGAATTTTGTAACTTAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09278 RUNX2, AML3; runt-related transcription factor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249225 lncRNA downstream 5449 13249591 ~ 13250436 (-) True G184026
TU249196 lncRNA downstream 40061 13145464 ~ 13215824 (-) True hmgn3
TU249160 lncRNA downstream 221388 13034252 ~ 13034497 (-) True G183981
TU249130 lncRNA downstream 347138 12907315 ~ 12908747 (-) True ost4
XR_005636849.1 lncRNA downstream 370110 12884370 ~ 12885775 (-) True LOC120546274
TU249249 lncRNA upstream 14708 13318488 ~ 13318930 (-) True G184049
XR_005636829.1 lncRNA upstream 35403 13339183 ~ 13398575 (-) True LOC120546199
XR_005636830.1 lncRNA upstream 47358 13351138 ~ 13398575 (-) False LOC120546199
TU249399 lncRNA upstream 538492 13842272 ~ 13842477 (-) True G184162
TU249445 lncRNA upstream 815242 14119022 ~ 14141806 (-) True G184204
XM_039782223.1 mRNA downstream 39985 13206330 ~ 13215900 (-) False hmgn3
XM_039782222.1 mRNA downstream 40000 13206330 ~ 13215885 (-) False hmgn3
XM_039782219.1 mRNA downstream 40008 13206330 ~ 13215877 (-) False hmgn3
XM_039782221.1 mRNA downstream 40010 13206330 ~ 13215875 (-) False hmgn3
XM_039782218.1 mRNA downstream 40016 13206330 ~ 13215869 (-) False hmgn3
XM_039782294.1 mRNA upstream 133290 13437070 ~ 13458215 (-) True mut
XM_039782293.1 mRNA upstream 133290 13437070 ~ 13458058 (-) False mut
XM_039781819.1 mRNA upstream 154822 13458602 ~ 13468035 (-) False fkbp1b
XM_039781820.1 mRNA upstream 169903 13473683 ~ 13491143 (-) True mfsd2b
XM_039780951.1 mRNA upstream 191158 13494938 ~ 13500594 (-) True ubxn2a
TU249198 other downstream 40061 13194077 ~ 13215824 (-) False hmgn3
TU249194 other downstream 40061 13206307 ~ 13215824 (-) False hmgn3
TU249195 other downstream 40061 13206307 ~ 13215824 (-) False hmgn3
TU249197 other downstream 40061 13206307 ~ 13215824 (-) False hmgn3
TU249125 other downstream 248017 12960498 ~ 13007868 (-) True LOC120547209
TU249306 other upstream 154836 13458616 ~ 13468065 (-) True fkbp1b
TU249319 other upstream 178144 13481924 ~ 13491128 (-) False mfsd2b
TU249578 other upstream 1168421 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 1267975 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 2485134 15788914 ~ 15791558 (-) False si:dkey-177p2.18

Expression Profile