RNA id: TU249306


Basic Information

Item Value
RNA id TU249306
length 1162
RNA type TUCP
GC content 0.44
exon number 4
gene id fkbp1b
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 13458602 ~ 13468065 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAAAATATCTTGGCTGTCCCACGGTTGGCTGCAGCTACGGGTCCGTAGTGGTCGGtgaatacatggttttcacCGATATAGCCCGACTTGTAGCCGCAAAACGGGTAACGTTGGCTGTCAAAACGGCTTTGTAGTTCTCTATGTTTCAGAGCTGATTTTTTAAGTAGTACAACCATGGGCGTGGAAGTCGAGACAATATCTCCCGGTGACGGAAGAACATTTCCAAAGAAAGGCCAGACATGTGTTGTTCATTACATAGGTATGCTGCAGAATGGGAAGAAGTTTGACTCTTCCCGAGACAGGAACAAGCCCTTTAAGTTCAAGATTGGACGGAGTGAGGTCATTAGGGGCTGGGAGGAAGGAGTAGCACAGATGAGCCTGGGCCAGAGGGCAAAAATCACCTGCACACCAGATATGGCTTACGGCGTGACAGGCCACCCTGGGGTCATCCCCCCGAACGCCACACTTATATTCGATGTGGAACTGCTCAAGCTGGAGTGATGCCTGAGGTTAAATACGAAGGGTGAAGCTTAATGAGGCTGAGTTTGTCACGACCTGTTTCTACAGGGAGACCATACTTGGCTGCTGCCTCCCACCATCCACCTACTCTTCTTTGATTTCTACAGTCTTCTTTAGTTCAATATTTAAACGTATCTACCGCTGCTTTGTTGCCATCTTGTCATAATACATCCTTGAGAAAGATTTCACATCGTGCAAGACTTTTTCACTCACACCACAGTTTGGCTTGTTTGTTAGTCAAAGATGCTATTTTGTTTGACTGCATTTAAAGTTGTACATTTTGTTGAACCGTGAGGAAATCCTTCATCATGATCACGAGCCACACTACATTGCAATCAAAACATATACTGCCTTACAGTTTCAACAACAGAGgatgtgtatttatgttgaaAGTACATAATTTCTGCTCTGTATCTTAACTGGGCATTATATACCACTGTCTGCATTGCCACTTTGATAAAGGTTTGTCCTGCTGAATGCTCTGAATGATGTTGCTATGTGTAGTATATTTTATATCCCTCATAAACATGTACTGCAAGGCTACCCaatcaaatctaacccaatccAATACTGTACAGAACTCTATGAGAGCCATTACTACTATGACAGTTTATCGACCAACTCTTGAATAAAAATGGCATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636829.1 lncRNA downstream 60041 13339183 ~ 13398575 (-) True LOC120546199
XR_005636830.1 lncRNA downstream 60041 13351138 ~ 13398575 (-) False LOC120546199
TU249249 lncRNA downstream 139686 13318488 ~ 13318930 (-) True G184049
TU249235 lncRNA downstream 200654 13255986 ~ 13257962 (-) False runx2b
TU249225 lncRNA downstream 208180 13249591 ~ 13250436 (-) True G184026
TU249399 lncRNA upstream 374207 13842272 ~ 13842477 (-) True G184162
TU249445 lncRNA upstream 650957 14119022 ~ 14141806 (-) True G184204
TU249450 lncRNA upstream 719363 14187428 ~ 14231705 (-) True G184208
TU249466 lncRNA upstream 754910 14222975 ~ 14225219 (-) True G184217
XR_005636876.1 lncRNA upstream 770361 14238426 ~ 14243275 (-) True LOC120546499
XM_039782294.1 mRNA downstream 401 13437070 ~ 13458215 (-) True mut
XM_039782293.1 mRNA downstream 558 13437070 ~ 13458058 (-) False mut
XM_039782558.1 mRNA downstream 154832 13255885 ~ 13303784 (-) False runx2b
XM_039782555.1 mRNA downstream 154836 13255885 ~ 13303780 (-) False runx2b
XM_039782556.1 mRNA downstream 154836 13255885 ~ 13303780 (-) True runx2b
XM_039781820.1 mRNA upstream 5618 13473683 ~ 13491143 (-) True mfsd2b
XM_039780951.1 mRNA upstream 26873 13494938 ~ 13500594 (-) True ubxn2a
XM_039780952.1 mRNA upstream 26873 13494938 ~ 13500577 (-) False ubxn2a
XM_039780958.1 mRNA upstream 111246 13579311 ~ 13802160 (-) False LOC120546185
XM_039780954.1 mRNA upstream 111246 13579311 ~ 13802160 (-) False LOC120546185
TU249198 other downstream 242792 13194077 ~ 13215824 (-) False hmgn3
TU249194 other downstream 242792 13206307 ~ 13215824 (-) False hmgn3
TU249195 other downstream 242792 13206307 ~ 13215824 (-) False hmgn3
TU249197 other downstream 242792 13206307 ~ 13215824 (-) False hmgn3
TU249125 other downstream 450748 12960498 ~ 13007868 (-) True LOC120547209
TU249319 other upstream 13859 13481924 ~ 13491128 (-) False mfsd2b
TU249578 other upstream 1004136 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 1103690 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 2320849 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 3022585 16490650 ~ 16517872 (-) False snap91b

Expression Profile