RNA id: TU249445


Basic Information

Item Value
RNA id TU249445
length 2729
lncRNA type inter_gene
GC content 0.42
exon number 6
gene id G184204
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14119022 ~ 14141806 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAATTCCCTttacactattttttttttttaaatcaacttcATGTTTTATCCTTTATGTCatacatacatttacatttccaGAGTGCATACGCGTAAGTTGATGAgaaggggaggggtgggggggggggactgttAAATAAAGTGATTCAAGACTAAAAAGAAGGATGTCTCGCATTTCTTATGAGACACATGTCAAATACTGCTCATCACAAGCATTACTCAGTAGTGGTACTGTACTTAAAAGTGCACACAGCCTATTCAATATCAGACAGCttcatataatataatataatggcaATTTAAACAATGATGCATTTCACACATTCAACATCAAACAAGGCAAACCAAGGCACAGGACTCTCACATCAATATctttttaaaaagtagtttGTACTTACATTGCAGGTAATCCTTCACATTCAacgttttttgtcgtttttttttttcagctgaaaTATGATTTGATATCAAATGGCCCGTGAGTTAAATGGCACTGGACAGCTAGGAAGTCCAAAACACTTTCTCGTGGTTTCTAAATGGGTTAAAAGTTAAAGAGGAAATAGTCCAGTTGTTCATTAGATCATGTCAACGCTGGTGTTTCACAGATATAAACTAAGCGTTTGGTGTCTGTTTGAACATAACTGAACTATTCCCCCACTTCAAACAACAGCTACCAATTCTGGGTGAACATTGGGTGACATACTTCCTGTGGTCCTGAGCATCTGCTCTGTGTACTGGGGAACTACACACACATTCCACTGTAGGTACACAATGAACCACTTAAGAGGAAGGCCACTGCTCTTTAAAACTACAGCAGGatcctctttttttgtttgattaTCCTGGTTTGACTGTTTTAGTTCAACGGAACAAAGGTAACGAATACAATGGGCAACCTGGTAACTTGAGCCAGCTACTGTTGGATCTAAGAAAAGGGTGTGTTGTTATGTGGGTATGTCTTATTTTAGTCCTGTCCAGCTAACGCCACAGTGATGTATCAAGCCACACTGGGTCCATACTGTTTTGCAGGTTTTAGTTTAAATGTTTCCAAGAAAATAGAtttacatttaataaacatCTCTGCTACAGAGCTACTGTAACATTTACAGTTGTTCAAATACATGCAGATACTGTACAACACACCTTCTCTTCACTTCCTCTGTGGGCTGAATTGcccacaaacaacacaaactaGCCAAGAAAAAAGAATGACACTGCATACTATTACCATGCCAAATCTCATACAAACCAAATAATGGTTAAAAAGGGCgggttttaaaagaaaatagcaGCAACACATAGGCTTAGTTCTGTGAGAACAAAATCGAGAACCAGCAAGCCACCAGTGCCTGTGGGTTAAACTAAAAGAGTTACATAGTTACATATGGAGCCTTCAGTGCAAAAAAGTAAAGGTGAATTTAAATCTTATAAAGATGTAGGCTTTAAAGGCTGAATATGCAGTGGTTTCTTTACAGTACAAGTTGACTCCACTTAAAGGACAATGTCCGCTGTAATTGAAATCAAAACCTTGGCACCACACACCTCACGAATCACCACTGCTGTCAATATcatgataataaaaaagaataaaaataaactactcTCTCTGTGCAATAGTTCAAGTAAGTTATTTCCTGCAAATAGTTAGTGCTTTGTAACACATCCTGTGGCCGTACCGAAAGAGACGACAACATAAAGGTAACatataaatacacaaaaaaagttACTATTTACATTAAACAGTTTTCTGGACAAGACTGCACTCTACGCAGAGAGGACCTCTACTTACCAATTCAGGCTCAGATTTGATCTAATCCTCCCATTGGTTACAATAAGGACCAAAGTTGGAGCAGTGTCATCCTAGATCTGCGGTCACAAACACATCCACCAATCAGTGTCCCAGTGTGAAGCAAAGCGACGAGGTTAAATCTCTAAAGGGGCGTGTCGTAGACCCGTTCCGATGAGCCCTCCTCCATGTCGTCCTCCGACTGCAGCGCCTTGTGGTTTAGCCTCTCTGTTGTTGAGGAGGCAACAAGGTTTCCGTGGACACCTTCGTCGCTAAGCTTGGCCTTGCTGCTGTCCTGAACAAACTCTTGGATCTCCACGGGTAGCCGGCGAAATTTGTCCTGGTACTCCTGGTCCAGATCGCTCTGTAGCTTTGGCCTTTCATCCAAGATTTGTTGGCGGATATCCTTCTGCTTCTCCAGCAGTCTCTCCTGTCTTTTACTCTGTGCGTCTtccaaCCGTTTAATGTACTGCACCACCTCGTTGACAAACGATCTGTTGATCTCCAGCTTCTCTTCCTCTGTCACATTCTTGTCTTTAGATTTGGCTTCACTGATCTTCTCTTGCCTTTTCTTGTCCATTTTCTTCTTGATATCCTTCTTTTCTTTCTCACAGATGTCTCTGAGTTTTTTGATCTGAGCGCTCTGGCACTCCTCTGCTATAGTGGTAAGCTTCTCAACCAgCTGCTTGATGTGTTCTCGTTTCTGGTACTTTTCGCTGTAGTACTGCTCCTGGCGAAGTGtgaggagctgctgctgctgctcctccttcAGCTCTGCAAGCCTCTGGCTGCACTCCTGATCCAGCTCACACAGCTCCTGGTCCAGGCTTGACAGAGAGTGTTCGGACcgactggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249399 lncRNA downstream 276545 13842272 ~ 13842477 (-) True G184162
XR_005636829.1 lncRNA downstream 720447 13339183 ~ 13398575 (-) True LOC120546199
XR_005636830.1 lncRNA downstream 720447 13351138 ~ 13398575 (-) False LOC120546199
TU249249 lncRNA downstream 800092 13318488 ~ 13318930 (-) True G184049
TU249235 lncRNA downstream 861060 13255986 ~ 13257962 (-) False runx2b
TU249450 lncRNA upstream 45622 14187428 ~ 14231705 (-) True G184208
TU249466 lncRNA upstream 81169 14222975 ~ 14225219 (-) True G184217
XR_005636876.1 lncRNA upstream 96620 14238426 ~ 14243275 (-) True LOC120546499
TU249475 lncRNA upstream 107408 14249214 ~ 14328936 (-) True G184224
TU249559 lncRNA upstream 251641 14393447 ~ 14394111 (-) True G184286
XM_039782651.1 mRNA downstream 131621 13981265 ~ 13987401 (-) True bmp2b
XM_039782650.1 mRNA downstream 161884 13946704 ~ 13957138 (-) False fermt1
XM_039782649.1 mRNA downstream 161885 13946704 ~ 13957137 (-) True fermt1
XM_039782334.1 mRNA downstream 174189 13938613 ~ 13944833 (-) True trmt6
XM_039781104.1 mRNA downstream 200898 13911571 ~ 13918124 (-) False LOC120546266
XM_039782010.1 mRNA upstream 102635 14244441 ~ 14322141 (-) False pak5
XM_039782011.1 mRNA upstream 102635 14244441 ~ 14322141 (-) False pak5
XM_039782008.1 mRNA upstream 102635 14244441 ~ 14290398 (-) False pak5
XM_039782007.1 mRNA upstream 102635 14244441 ~ 14287968 (-) True pak5
XM_039782009.1 mRNA upstream 102635 14244441 ~ 14287966 (-) False pak5
TU249319 other downstream 627894 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 650957 13458616 ~ 13468065 (-) True fkbp1b
TU249194 other downstream 903198 13206307 ~ 13215824 (-) False hmgn3
TU249578 other upstream 330395 14472201 ~ 14498370 (-) True G184299
TU249614 other upstream 429949 14571755 ~ 14579169 (-) False naa30
TU250064 other upstream 1647108 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 2348844 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2687990 16829796 ~ 16835983 (-) False gpatch2

Expression Profile