RNA id: TU249640


Basic Information

Item Value
RNA id TU249640
length 565
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G184346
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14655657 ~ 14656247 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAAACATCTTCGATCAGCTCGCCAAATCCTGCAAATCTTGCTTTTGAATATATACAACAATTAGTGTAACACCATTGGCATGTGGATGGAAGAACCGCTGCAGCACCCTCATTGGCTTTTAGTTTCTAACCtgatatatttattttacctaatttttcttcacttttcctTTGTTTTATTCTTCATTTGAACTCTCTTTGGGTTATAGGTGTCCATATGCAATTTCCTCtcccttgttttttttagattttaataTCTGTGAATTTTTAGATAACAGTATTTTAGATAGTTAGAAACCGCCAGTAACATCATTAGCAGTTccctaactttctttttttttttatgcttgaCCTTCACTTCAGATGGCAAAACCTCAACCTCCTCAACTTATGAACTCATCTTACTGTAGGTGAGTGAGTAGCTGACACGTAATATACAGCGTAAAACCTCACAGTTAATAATGCATTCCTTTTAATACATAGGTGTTATGTACAgctattttgtattattttatatCATATTCTTCTGTAATCGTCCGCTGCACAGACAATCGCTATACACATGT

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249589 lncRNA downstream 162089 14491099 ~ 14493568 (-) True G184306
TU249570 lncRNA downstream 216702 14432231 ~ 14438955 (-) False G184295
TU249571 lncRNA downstream 216702 14432231 ~ 14438955 (-) True G184295
TU249567 lncRNA downstream 223485 14427804 ~ 14432172 (-) True G184293
TU249565 lncRNA downstream 230810 14423153 ~ 14424847 (-) True G184292
TU249642 lncRNA upstream 10888 14667135 ~ 14667581 (-) False LOC120547045
TU249658 lncRNA upstream 15647 14671894 ~ 14677060 (-) True G184356
TU249666 lncRNA upstream 33059 14689306 ~ 14689940 (-) True G184360
TU249654 lncRNA upstream 43437 14699684 ~ 14702181 (-) True G184354
TU249656 lncRNA upstream 43437 14699684 ~ 14702181 (-) False G184354
XM_039782747.1 mRNA downstream 42711 14571380 ~ 14612946 (-) True naa30
XM_039782745.1 mRNA downstream 42711 14571659 ~ 14612946 (-) False naa30
XM_039782748.1 mRNA downstream 42716 14606051 ~ 14612941 (-) False naa30
XM_039782749.1 mRNA downstream 63422 14584030 ~ 14592235 (-) True actr10
XM_039782750.1 mRNA downstream 89126 14561407 ~ 14566531 (-) True cipcb
XM_039782416.1 mRNA upstream 930 14657177 ~ 14667601 (-) True LOC120547045
XM_039782856.1 mRNA upstream 21293 14677540 ~ 14680093 (-) True arf6a
XM_039782854.1 mRNA upstream 47220 14703467 ~ 14706436 (-) True fkbp3
XM_039781333.1 mRNA upstream 135866 14792113 ~ 14929662 (-) True LOC120546409
XM_039782493.1 mRNA upstream 453993 15110240 ~ 15111479 (-) True rps29
TU249614 other downstream 76488 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 157287 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 1164529 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1187592 13458616 ~ 13468065 (-) True fkbp1b
TU249194 other downstream 1439833 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 1132667 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1834403 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2173549 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 3105709 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 3106151 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile