RNA id: TU249654


Basic Information

Item Value
RNA id TU249654
length 1669
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G184354
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 14699684 ~ 14702181 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTTAATTGCAAGATACACCACACTGAGTTCTCTTTTGTCCAAGCCAAATTTATTATTCTGTACAGCAGGATAACATTTCAACTTGTAAAAACCGATGGGATGTGATCAGGTTTCTCCTTTTGGACATTGGAACACTTAGGAGTTGGCGTTGGGTCCCTTCTTCTTTCCGAAGGTGGGCACCACGTTCACAAAGCGCCTGTTGTACTGGATGCGACGCTTAGCACGGCCagtcctctttttcttcttctcctgcttGTCAACCTAGACAACATGACAGGAAGAGACATGTTATTTCTCTAAGATCATAATGTATTTTAAACTAGCTTAtcagaaacagaaaatacacaaGCCAATTTTATTCTGAATGCTATTCATGTTCATAAGCAGCCTGCCAGCTACCTCCAGGGTGCAGTGCTCTGAGACACCACAGGATGCCAGGCAAGCATCATCCTCCAGTGGGCTACCAGCAAGCAACAGCACCTGATCCTCAACCAGGAGACCCTCCAGATCCTGGACATGGGCCTGAGAGACGCACCAAAGTATTGGAGTTTTTATTCAAACCAAAGCCATGTTAAACCATTACTAAAGGGCACATATAGATAACTGAAAACAGCAATGCAGTCAAGTTATACAACTATTTCGAGATAAGAGGTGGTCTGGTGTATTCTCATCAATTTGTAATATTTGTACCTTGATCTGTCCAACAGTCTCCTGTCCGGTCACCTCAAGGGTGTGAGTGTTCTGGGCACGCAAGAAGAGCTGCATCTTGATGCTGGAAGAAAGCACCGAAGAGCCAAGCGACTTTAGTCATTATCAGTGTTTCTACTGCGGAAATCAGCTTGAGGCGTTGGTATTATTTGTGACAGTAAACATTGGTCACCAAGCCCGCCACGTTGTGCCAGTGTCTGATTGTTACGTAGTTAATTTTGACGTGGAAATACACTTACAATGTATACCGAGTCACAAAACGGGCAACTTAAATACTGACGAGAAGCAGAACATGCTGGGAGCTGGAACAGACCAGTCTCTCTCTCGGTAATTTGCTAATGCTATGCTAGCTTAACTAGCCGCATGGGGCACACGTTTCATGAAGTCGCTTGAAAACACGTGAAATTTGTTCTAACTGTTCAAATAAACAAATCACTTGAGATAAATGATGATATAGATAATACATTCGCATACCAAAACATTCCAGGTTTTGTCATAATTATGGATTTTCACTTAAATTGCACAGGCCTTACCTCGTTTGATGCTAGTCGTTCAACGCTAGGCATAGAAAGGGCTGTATAAGGGCCGACACTGCGCATGTGCGGATTTACGTAACCATGTCGAAAGCAGTGGCCACGCCCACCACGCTATGGAGGTTGAAGGTGATGCGGTTAATGGACGATCACTCGTCTTTTTCGTTGATTTAATCGGCAACAACTCTACGTTTCACTTAATCACGTGCAATttgttcaatatatatatattttaaactcCGTGTGTCGCATGTAACACAAGCTCCACCCACCTCTGGAAAGTTAGGACCAATCATTAAACTTTCTGCCCAACTAAAGGAGCTGTGGCTCGAGCAGGCCTAGGTTTATTTGTGCGCTTTTAGTTTCTATGGATTACTTTCTTCACATTACTCCGCAGTCTAACATTAATTTTATTAAGTCACTGTTG

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249666 lncRNA downstream 9744 14689306 ~ 14689940 (-) True G184360
TU249658 lncRNA downstream 22624 14671894 ~ 14677060 (-) True G184356
TU249642 lncRNA downstream 32103 14667135 ~ 14667581 (-) False LOC120547045
TU249640 lncRNA downstream 43437 14655657 ~ 14656247 (-) True G184346
TU249589 lncRNA downstream 206116 14491099 ~ 14493568 (-) True G184306
TU249695 lncRNA upstream 339128 15041309 ~ 15041536 (-) True G184381
TU249700 lncRNA upstream 361657 15063838 ~ 15068284 (-) True LOC120546290
XR_005636854.1 lncRNA upstream 362067 15064248 ~ 15068279 (-) False LOC120546290
TU249721 lncRNA upstream 408060 15110241 ~ 15111442 (-) False rps29
TU249728 lncRNA upstream 430036 15132217 ~ 15138715 (-) True G184404
XM_039782856.1 mRNA downstream 19591 14677540 ~ 14680093 (-) True arf6a
XM_039782416.1 mRNA downstream 32083 14657177 ~ 14667601 (-) True LOC120547045
XM_039782745.1 mRNA downstream 86738 14571659 ~ 14612946 (-) False naa30
XM_039782854.1 mRNA upstream 1286 14703467 ~ 14706436 (-) True fkbp3
XM_039781333.1 mRNA upstream 89932 14792113 ~ 14929662 (-) True LOC120546409
XM_039782493.1 mRNA upstream 408059 15110240 ~ 15111479 (-) True rps29
XM_039782226.1 mRNA upstream 419648 15121829 ~ 15128493 (-) True wdr20b
XM_039782227.1 mRNA upstream 419648 15121829 ~ 15125145 (-) False wdr20b
TU249614 other downstream 120515 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 201314 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 1208556 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1231619 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 1483860 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 1086733 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1788469 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 2127615 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 3059775 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 3060217 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile