RNA id: TU249753


Basic Information

Item Value
RNA id TU249753
length 2649
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G184417
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15169136 ~ 15173640 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaaacacccccccccccccccccccccccccccccccccccccccgccgctGCAGATTACTGAAGGGATGGAATCACTTTGATCAAATCCACTGGAATACCCAGGGCACAGGGGGATACGGGTTGGGTAAAAAGCCTTTGGTGAATGTTGTTCTTCAAGACAaacatggagagaaagagaaagaaaaaaaacaacatgactgCAGTATTATTTACAATTTGCACATTCAGTTGAAACACTGACAAGAGGTTCTGCAGGCAAAGGAAGAATAAAAccacgacaaaaaaaaaagaacttgcAAGCATCCAGAAGCAGATCAAACAGGTGTCCAAATAACGAGCCCTACAGGGTAGTGCGTTTttacttgggggggggggggttacagtCAGTGTGCAGGTCTGGGCAGAGGGGGTCAAACAATGGCACAAATCAGAAGTGGAGTGGGACAGTGGGGGCGCAGAATGGAAAAGTCACAATCGGAGGTGATTTCCTCTGCTGTGGAGGCTAGCTCTTATCCGCCCCACACCAAGACAGACAGCATCACGGATTTCAATTCTTTAAtagtttggttgttttttttcagttgtgtttctatttttctttcaaGTTTTATCAGGAAGTGCTTCATCACTGAAATGGCTTGGGGCGACCACTCTGCTTCTCCTCTTTAGCTTTTAATTACAAAATCGACTATGCAGCTTGAACAAGGCATGTGCTTGAATCCGAGCGGCTGGAGGTGTGCCAAGTTCGGACTTGAATGCGTcggggggtgttttttttggaaACTAAGGTTACAATTGTTTTTCAATGATCTGGCTTTTTAGGTCATGCTACTACACAATTCTCGGTTGAGCAAATATCCCTTTAGACTATAAAAGGCACTGTGAAAAGAAAGGCTTATGTTTGACCTATTTGAACCAAACATACCTCATCTATGGAGCAGTCTAACACgtgttttataaataaaaggGTCTTGCTTGAGAAGAGTAGAAAAAGCGATCGCTATCAgcacagtttctgcccccgttTGACTTCTGTCAACACACAGCAGCATTGTGTAAATCCCAGACGAGCAactccatctctctgacctctcgTAAGCCTCACATGAATGACAGCGACTTGTACTGAATGCTAATGAGCGCTGTTGAACACGCTCCGACCACGGCTGGATGCGAACGGGCAACCAAAAATAAATCCAACAATCCCCTCTCATGTAACTGGCGAAGCAAACCAGGCTCGGGCTGGACTCATCCCAAGGACCAATCGAACGGATCCAACCACGTAACAACAAACTATCTGAGCCACCGACACACACCGCAAACCTGCGTTAACTTATTGCCGACACAATTAAAAGAAAGGAACTAAATTGAAGACAAGTTGGCACCAAACTAGGCTTGGACGCACTCTGGACCCCTGTCCGGCCAGCCCCGTTGGATGAACAGAGTTGTGTTGTAGCTTTGAATCCTTAACGTTCTACCGGTAGTCCCAGATGACCCTGTCCTGATTACCAGAACCATCAATGAATCATCACAGCtaatgaaaagaagaaagaaaaaaaaatagcggGCTCCAAACAGAGCAGTTATACGGATAGGAAGTGTGTTTTACTCtgagaagagctcctaatataCACTatgtaggaaaaaaataaaatataaacagcTGTCTAGTTTAAATGTTATGAGAATAgctaatattaaatatatagaaACAACTGACATTTTCTCATaaactgatgtttttttcttttaaaaatcaaaCCGAAAGGCTAATATTATTTGTACAAGCACCTGACATCTATAAAGAAGAGGTGAGAAGAGAAGACGGCTCACGCACAGAACAGAACACCTGAGAGAAATGACCAGAAGGGGGCAGCACAGCACCCCGAAAAGACAACGAGTTGCGAGGACAGGAGAAAAACGAGGGAGGGAAAAGCGGTAACGCCACGACAGTATCTTGGGTGAAGTTCGGGGCCATGGTGCATTCCCGTCGCGTCTGCCGTCCAGCGACCAGGACAACAACCAGGTGGATAAAAGCTGAAGGTGGGTGGGGGCCACAAAAGCCATACAAGGCTTAGACGTGTGGCTTTAGACATTCCCTGCGTCCGGTGGAGCTGGGACTGTTCAGTTCTGTGTTGTGCTGTGCTGGACTGAGATACCAGAGTTCTGCTGTTGTGCTGGCCTCTGTGGGCCTGTGGTTCCCCTGCGGATGCTGCTGCTGGTTTAGGATGGCTCTTGGGTGGTCTCCTAGTGGCCGTCGTGCGTCGTCAACATTTCCTCGGCTCTCCGGTGCAACTCCAAGGCTGTGACAGTGCAGATGTCCCTGGGGAGCTCGGATTTCCTCCTCATCAATGGGCGCTCTCTACGCTGTTCTTTTAGACCTGTGTGGCTTCCTCCGTCATAGCTTTCTTTAGCATGTTGACATCGTCTAGCAGCGGCCCGTCTGTCTCCATGTCCATCGGACTACCTGAGCCTATCGAGTCCACGTATATCAGAAACTGTGGGTTTGACTTTGCAAGATTCTCAATCTTCAGCCACgcatcttctctctctttccatttggCTTTCTCTTTGCTTTTCTCTGCCCTGAACTGCTGGGTgcagtcatcaaacagcttcTGGTTCATCTCCATGAAGAGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249728 lncRNA downstream 30421 15132217 ~ 15138715 (-) True G184404
TU249730 lncRNA downstream 30823 15135469 ~ 15138313 (-) True G184406
TU249721 lncRNA downstream 57694 15110241 ~ 15111442 (-) False rps29
TU249700 lncRNA downstream 100852 15063838 ~ 15068284 (-) True LOC120546290
XR_005636854.1 lncRNA downstream 100857 15064248 ~ 15068279 (-) False LOC120546290
TU249756 lncRNA upstream 71 15173711 ~ 15174119 (-) True G184420
TU249791 lncRNA upstream 109609 15283249 ~ 15288885 (-) True G184452
XR_005636867.1 lncRNA upstream 522860 15696500 ~ 15700999 (-) True LOC120546341
TU250055 lncRNA upstream 560778 15734418 ~ 15735282 (-) True G184662
TU250061 lncRNA upstream 599046 15772686 ~ 15775486 (-) True G184668
XM_039782226.1 mRNA downstream 40643 15121829 ~ 15128493 (-) True wdr20b
XM_039782229.1 mRNA downstream 40643 15124567 ~ 15128493 (-) False wdr20b
XM_039782227.1 mRNA downstream 43991 15121829 ~ 15125145 (-) False wdr20b
XM_039782493.1 mRNA downstream 57657 15110240 ~ 15111479 (-) True rps29
XM_039781333.1 mRNA downstream 239474 14792113 ~ 14929662 (-) True LOC120546409
XM_039782233.1 mRNA upstream 25789 15199429 ~ 15201090 (-) True LOC120546952
XM_039782806.1 mRNA upstream 98538 15272178 ~ 15276579 (-) True slc25a47a
XM_039782715.1 mRNA upstream 174120 15347760 ~ 15384587 (-) False syndig1l
XM_039782714.1 mRNA upstream 174120 15347760 ~ 15384587 (-) True syndig1l
XM_039781456.1 mRNA upstream 432428 15606068 ~ 15652295 (-) True ino80
TU249614 other downstream 589967 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 670766 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 1678008 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1701071 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 1953312 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 615274 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1317010 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1656156 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 2588316 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 2588758 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile