RNA id: TU249791


Basic Information

Item Value
RNA id TU249791
length 5055
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G184452
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15283249 ~ 15288885 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCagaatcattttttattttgccaTTTGTACAGATCATCAGTGACAAATCTAGACAAATAGGTTATGTCAtgattatgttaaaaaaatatgtctCAGTTTTTCAGTTAAAATCTCTTCAGTGTAACAGCCAACTCAAACTGATGAAAGAGACTTTAAAAACTGCGTAAACTCAGACATTCAGGGAACCACACAACTACCTCAGACTGCaaaatatatgtactgtatatatatttacataacaGAATCTCACATTAACACAGTTATATCCTGTACATATTGCATCTTTCACATCAGCTGGACTACATGTTAGCTGTCAAATGGCAATCACCAAAAGTTTCAGATGTAATCTACCTTACAGTCAGAGAGGTAACAGTCACCGTTCAAGAGGTGGAATAATTGAGTAAACACAAGCAACTTCTACAGACATACTGTACCAAATATCCCTTTGCACTTTCTCATCATCACCCACAATCAACCAGAATACAGTTTTTCAGCAGCATTGAACAATTCAAACTAGtgacatttaaatttaaaacaacaTGATTCCAAGAAATCATTGTATCCCTCAAGTCTGAGTTTTAGTCCAAACATCTGTGAGTGAATACAGCTGTGTTACATTCAACATACGGAAGGTTCAAGTGCATCTGGGACTTTCTGCTCTCCAACAGCCCGTCATAGAGTCTTCATAAACAAAATGACAACTGTAGCTTGATTTGTTGCCAGGTTTACAACTTCAGACAAGATCTCAGAAAAGCATTCAGGGGAACGGGTTGTCAGTAGTACCGACGGTTTACGGCTGATGGGAACTgactaggattgggcatcgagaatcGGGTCCAACTTGGAATGgtttcaaaaatgaaaaactggcaaaaattctctttttctttttttaaattgaaatcatttggaaaatttggttttgaatctGATcatctagggctgggcgatatggagaaaatcaaatatcacaatattttttactaaatacctcaatatcgatactgcaacaatattgtagtgttgactattggtgctttcactaaatatttacacaatgagatttttgataaataatcatcagtaatgtggatataatgactaagttggtaaacacaaataacagaacagtccggtaagttcagaaaagtacatcactttactgtaatgcagcctttaaaaccaggaaaaaacaacacttatgccatattacgatatccaaaatctaagatgatatctagtctcatatcacaatatcgatataatattgatatattgcctaGCTCTATGATCATCGGTcccaaatttaacatgcacaaTTTTTGGTTCCTGTAGCGGCCACCGTACTTGCAGGCGCTTGTTATAAGTAAGctgcgctctagtgtggctttacttttcattgaaaaagtcaccattgaatcaaaattaAATTTTCCTCtcatctgtgaaataagcaactccacccatagatatagaacaagactccacccctcaaagaatcggaatcgatgagaaccggaatcgaatggaagaatcggaatcagaattgttaaaatcaaatgGATGCCCAACTCTAGAACTGACGCATTAGCCTTTTTGTAGGGGAGTATACTTTGATTGGTTTACAGCAAGATATTCAACATTCAGGCATAAAATatcggaagaaaaaaaaaatctgatactgaccacacacatgcagaaagcAGACAACCACTCATTAACAAAAAACTGATTacgtttctcatactgcccaatGCTGCAGTGCTCAGTCTGataaacctgtttgagtcgtgatTCACTCAGATCTTTCACCcgagtctttaaattgactcaTGAATCACGAGTCTCTAGTATAACTAAATctgatcagttgagtcctactacaattcaatctaaaatgatagcagcgccacacacaaacctcttgcaacattagctactactagGGTTGCAAAGGGGTGGAAATTTTCTGCTAAATTTCcagaaactttccatggaaagtttagctggggaattttggaaacattccaattttgatttactatggttagtgggctatacaattaacacacaaaGGTTAATAATAGCAATGGGTTATGTATTAGCCCTGTTATAGACTAACAGTATTATAACaatcaatattaaaaatatccagtttattcccattaattcccatggaaagtttccaactttgaaaattcccagaattttgcaaccctagctactactagtcctagccatcttagctgccaaaAGCTTTATGACTTACAATTTCATAGGCAACAACAACTCCACAAGTCATCTCAAGcgactgagtgagcagagagacagtccaAGACAGGTTATAGGAACTTCCCGACCCACAGACTCAGAGctggaaacattgcaagctcgcaGACCATGGGACTAACTCGAGAGTCCTCGATGACTAGTGAGTTGTTGATGACTAGCAAGTTATCGATGATTCACGAGTTCTCGCATGAGTCAGTCAATCGCACGAATAAGCCGGCTATGAGTAGTATGAGATCAATACTGacaagtgactcgcacaacccggatcagtttagtgagtgactcagaataacctgaaTCCTTAAAAAgaatcgagtttgccaggcctacAGTCTGAGCtacagtctgctctgattggtcagctggcccactctgttgtgattggtcaaccaaattcagAACAAGCCCCTGGGTgggctgtgcttgctcaggcagcacctatGGGCAGCAAATATGATAAACTGGGCTGGCATTCTCAATTAGTGGCATCACTAATTAAAGACTTCCAAACAGAAATGTGGGAAGGCGTATCTaggcagttaaaaaaaagtgctgtctgtgggagagaaaaAGGAATGAGGGCCATCCTAAATGCTGACCCTCCCAATTTTAACTTTTTCTAAAACTTTAAAGAGAGACCACCTAGCATGCATTTCTGACCCTACAATAATCATATAATGTGCAGCTTTAAAAGCtattttaaaactaaaatttacaaaaataaagtaaaatagtGGAACAAGTGTGGTGCTACACCCACATGTAGCGCCATGTTCCACTTCTGGATCAGGCCTTTATTACAGTAGTACAGTTACAATGATAACACTtcacattattaaaaaaaacaaacatgctaaacAGACCAAACAAGACCTAACACCACCTACCATCCTGATTCACACATAGACCCACTATACATTCAGAACAGTGGATTTCTGTACTGACATGTGCTGTATGGAGTAATAGTGCTTTAGTTAGGATTAGATTATAGCTGCAATATGTTATTTGGTTAGAAAGCAGACACAAGTGATAAGTTCTTTGTACTTATCAAATGCTACATTCCATCGCCCTCTTGCTTGGCTCCTCAGAGGATACAGTTCAGCTACAAACAGGTGCTTCAGCTTccttaaacaaaataaaaaatgtcatattataAGGCAGGGAAATGTCTCcaattgacatttaaaaacagaactaaaaccaatgatatatacaggTGCAGCGAAACACTGCACATTTCAAGATAGATCAACCTTCAGTGTCTACACTGTACACACCATGTAGCCACACCCTTAGTTTTGTGGCTCAGTAACAAGTCATAATCAGTGTCACACAAGATCATTCTCACAGATAAAAGCTGTGTTCAAAACTTTCATGAATCTCATAGCTCCATTTTCCCCATCTTATCATAGGTAACACCATCCCCTTGTACAAGTCTGCATCTTCAGTGGCAAACCTAAAACTTAAATTATagctaaaaataaatatagttGCCTTCGTTTCCTTTTTGACATGAAAGTAAAAACACGTGTTTATATAaaccaggtttttttttctcaaaattggaaatgggGGGTCTGGTGTGAGACTGAGTCAGACATTTATAAAGggtttgtatgtttatataaTCCATGCTCCTGTAAAGTGCCCAGGTTGAGACCTCTGTGCTGTCACAGGCTGGAGGGTTGGGCCTGCTGCTTTATCTGTGTGTGGTGGCTTGGCTGAGCCTGCTCACAGTCTTTAGGCCCCTCCTCCACCCCCCGGGCGTACATGAGGATAAGGGTGACGGTAGCAAAGGTAGTTGCATTCACAGGGAACGCCCGTAGCAGCGTGGAGGTGAGGCCTCGTGTGAACACCATGTAGCCCTCTCTCCTGATACTCTGTCGCACACAGTCAGCGATGCCACTGTACTGGTTGACTCCACCCACCCCGTCTGCCTGCAGCCGCGATTTGATCACATCCACAGGGTAGGTGGAAAGCCAGGAGGCAATGCCAGCCATGCCCCCTGCAAACAGCAGTTTGGGGATCATGTAGCGGTCATCCGGCTCACAGCCAAGGCTGCGCGTCATCACATCATAGGCCAGGAAATACACTCCAAAGCCAGGTGTCTCGCGGATTAATGTCGTGACCATGCCTCTGTTTACGCCCCGCAGACCCTCCCGATTGTAGATGCGTGCCAAGCAGTCCAGGGAATTCTTGTACAACTTCCTAGAAGACTTCTTCTCCCCAGTACCCTGCATTTGCATGCGGGTTTTAGCCAGCTCCATGGGGCAGCAGATGACACACTGGATGGCACCTGCTGCTGCACCAGCAAGGAACTGGTTCATGGGGGTGTCCTGTCCCAGCAACCGCATGGTGTTTCCCTGAACACCAAACACTATAGCATTGATGAATGTAAGGCCCATCATGGGGGATCCGATGCCTTTGTACAAACCAAATACCTTGCATAGATGTCATCGTGAGCAGCAGGCTCACAGCTTTACAGCCCAGGAAGGTAGATGACACATAGCAACAAACCAcctgaagaaataaaaacatgtatttcaaTAAACTCTATGGACTGGAAAAACTTCACATACGTCAGAGCCAAGCTAACAAAGCAAACATAAACATAGTCACTTATCAGTAATATTACTGCTTGCATATATTAGCATTAGACTTGTATGGGAAATAAATCCACGTACCGTCTCCTGCCGTATGATGGACTGGAAACAGTGATAGGTCCCACGGTACAGAGGCTTATCAACACTCTGGACCTGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249756 lncRNA downstream 109130 15173711 ~ 15174119 (-) True G184420
TU249753 lncRNA downstream 109609 15169136 ~ 15173640 (-) False G184417
TU249752 lncRNA downstream 109609 15170118 ~ 15173640 (-) True G184417
TU249728 lncRNA downstream 144534 15132217 ~ 15138715 (-) True G184404
TU249730 lncRNA downstream 144936 15135469 ~ 15138313 (-) True G184406
XR_005636867.1 lncRNA upstream 407615 15696500 ~ 15700999 (-) True LOC120546341
TU250055 lncRNA upstream 445533 15734418 ~ 15735282 (-) True G184662
TU250061 lncRNA upstream 483801 15772686 ~ 15775486 (-) True G184668
TU250065 lncRNA upstream 503401 15792286 ~ 15792812 (-) False si:dkey-177p2.18
TU250107 lncRNA upstream 723615 16012500 ~ 16015535 (-) True G184696
XM_039782806.1 mRNA downstream 6670 15272178 ~ 15276579 (-) True slc25a47a
XM_039782233.1 mRNA downstream 82159 15199429 ~ 15201090 (-) True LOC120546952
XM_039782226.1 mRNA downstream 154756 15121829 ~ 15128493 (-) True wdr20b
XM_039782229.1 mRNA downstream 154756 15124567 ~ 15128493 (-) False wdr20b
XM_039782227.1 mRNA downstream 158104 15121829 ~ 15125145 (-) False wdr20b
XM_039782715.1 mRNA upstream 58875 15347760 ~ 15384587 (-) False syndig1l
XM_039782714.1 mRNA upstream 58875 15347760 ~ 15384587 (-) True syndig1l
XM_039781456.1 mRNA upstream 317183 15606068 ~ 15652295 (-) True ino80
XM_039781457.1 mRNA upstream 365017 15653902 ~ 15659491 (-) True vps18
XM_039781227.1 mRNA upstream 388985 15677870 ~ 15680252 (-) True pigh
TU249614 other downstream 704080 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 784879 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 1792121 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 1815184 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 2067425 13206307 ~ 13215824 (-) False hmgn3
TU250064 other upstream 500029 15788914 ~ 15791558 (-) False si:dkey-177p2.18
XR_005636881.1 other upstream 1201765 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1540911 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 2473071 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 2473513 17762398 ~ 17762482 (-) True LOC120547359

Expression Profile