RNA id: TU249814


Basic Information

Item Value
RNA id TU249814
length 493
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G184474
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15478491 ~ 15479080 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAGAGAGGCATATGGGAAGAGGAGAGGCCATGGTGAACATGAGGGCGGCCTGAGAACACACCAGTGAAGATGCTGAGATACGACAGAGCATTCGGAACAGGTGGCGAAGCAGACAGGAGATCAGATGAAGAGACACGGAAAAAGAACCTAGAGCCCTGAAGCTACAGCGAAGAAAACACCAACACCAACCGCTAGCGGCAAAAGTGGGAGAGCGTAAAACCTCTCCCTCCGGCgtTATGCCCAAGGAAGGCGACACACGGAAAGGAAACTGCCTGCCAGCAGAACCCTGTGGACATTTTAAAGTGAAGACTCCTGTTCTGTTTAGACTGTTTTAGttgatttttagtttttaaatccttttttattttgttatttttttaaagtaatttttgtttttatccttttgttaaaataaatgtgttactcctatttgtttttactcattgttttgaatACATAGTTTTTACTGCTCTCCCCCAGTAAAAAAGAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249805 lncRNA upstream 155603 15322575 ~ 15322888 (+) True G184465
TU249803 lncRNA upstream 156369 15321746 ~ 15322122 (+) True G184463
TU249801 lncRNA upstream 158252 15320018 ~ 15320239 (+) True G184461
XR_005637012.1 lncRNA upstream 213774 15257133 ~ 15264717 (+) True LOC120547009
TU249768 lncRNA upstream 275976 15202306 ~ 15202515 (+) True G184431
TU249823 lncRNA downstream 14124 15493204 ~ 15493527 (+) True G184481
TU249855 lncRNA downstream 175766 15654846 ~ 15655520 (+) True G184509
TU249854 lncRNA downstream 199917 15678997 ~ 15680159 (+) True G184508
TU249871 lncRNA downstream 298149 15777229 ~ 15780546 (+) True G184521
TU249880 lncRNA downstream 318735 15797815 ~ 15798794 (+) True G184526
XM_039780969.1 mRNA upstream 177784 15296281 ~ 15300707 (+) True vrtn
XM_039780970.1 mRNA upstream 177784 15296616 ~ 15300707 (+) False vrtn
XM_039780985.1 mRNA upstream 185239 15289674 ~ 15293252 (+) True LOC120546207
XM_039782031.1 mRNA upstream 191640 15277585 ~ 15286851 (+) True slc25a29
XM_039782510.1 mRNA downstream 109003 15588083 ~ 15597893 (+) True dll4
XM_039782709.1 mRNA downstream 123255 15602335 ~ 15604166 (+) True chac1
XM_039782916.1 mRNA downstream 181590 15660670 ~ 15663661 (+) False rhov
XM_039781221.1 mRNA downstream 201381 15680461 ~ 15687727 (+) True zfyve1
XM_039781224.1 mRNA downstream 215864 15694944 ~ 15719632 (+) True dpf3
TU249798 other upstream 159655 15301925 ~ 15318836 (+) True G184458
XR_005636833.1 other upstream 185239 15289674 ~ 15293252 (+) False LOC120546207
TU249525 other upstream 949121 14525136 ~ 14529370 (+) True G184258
TU249487 other upstream 1097304 14362341 ~ 14381187 (+) True G184231
XR_005636930.1 other upstream 1356977 14024484 ~ 14121514 (+) False LOC120546742
TU249859 other downstream 181493 15660573 ~ 15663574 (+) True rhov
XR_005636865.1 other downstream 215864 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other downstream 215864 15694944 ~ 15716284 (+) False dpf3
TU249895 other downstream 435565 15914645 ~ 15968123 (+) False LOC120546249
TU250012 other downstream 920358 16399438 ~ 16402103 (+) False G184628

Expression Profile