RNA id: TU249901


Basic Information

Item Value
RNA id TU249901
length 1519
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G184540
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15926071 ~ 15927662 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAGACACATCAAGtgaaaaaaatagtttacacaaaagttacacaaaaaaataaatgtaaatccaGCAACTTAAACAAGACAAGGCAACTTAAACAAACCAGTGGACCATGGATCATGCATAAAGATCCAGACCTGAGCAAAATAGATTATTTTGTCTTCAAATATTTGAGATACTGTGAGGGCGCTAGATGCTACATTACACCAAatatcctctccagtgaaagcCACCCCAAAGTATATCAGCAGAGAGTCACCCGTCACTTTCAAATATCTGAAAtgtctttaatttatttttatcagGTCTCCGAACAAACTTACAACTTCAGGCCAGGGATAAAaccttttatttgtaaaatgagaCATTTTATATTGTTCTGAGAGTGTTCGCATCCATATTGGGTGAACAGTGTAGGAATGGTACAGCATTGTACTCTCCCAATTTTAGGGCAATGCGTAAATGATAATAGTTGCAAAGCAGGCTGGGCAGAATGGCCCAGTTACCATTGGTCCACTACAATTAGGGGACCAAGAGACTAATAGTTGGCTAATTTTAGGGGAACTCATCAGGATGTAAAGATCCTCAAATGAAAGCGGTCCAATATTTTGGTGCACAGAACAACAACTAAATGTCAGTGCCATTGCCCAAATATACTGGGACTACACTAACTCAGATGTGATCTCCTCAGTGCAGCTTTAGCATGTAGAATTCATCATATCTGGGAGGacatttttaattctttttgtttgttttttttttagacagaaAATTTAACTAATCAAGACGGCCAACAAAATCATACACAACgttgcaaaaacaaaaagcttAAGTGAAGAGACGGATGTAGCAGATCACAGCGAATGTGTGGAATCTGAGTGGGACTAATGGCATGTGGGCATGTCGGGTAAGTGATCAAATTGTGCATTCAGACTGCGAGCAACATGATAAGACATGTCACCAGACTATCTGTTCCCCTAAGCAGCCAGAAAGATTAATCTGTAGTCTTCAGCAGCTAGCTCCATCATTTCTCTTAAAAATGGCTTCCAAATTCtaaaaccaaaatgtaaaaaaaaggtgCACCTGGTTTACGGCCTCTCACCCAGCCACATTTAGTCAGAATAAAGCGACCCCTCAACCTAGTTGCTGAAATACCAAAACGAGGCGTAGGGATACGCTGTGCGACTGGAGAACTGACCTGGTCGTGGTCGATGTCACAGTCACCAGTAATGACGATGCGTTTCTCGATCCTTGTCTCAGATAGGCCGCCCTTTAACATCtgcaacaaaatacacaacgACAAAGCTTTGGTGCCTGTTATAAAGGGTTAATTATGAACTAGTATGGCCCGCGCCTGGGTGCTGGTGGGATACGGCAGAGTGGCTAGCATTGTCAAAGCAGATAAGTCAGAAATACCACGAAAACATCAAGAGAGACGGACAAAAGAACGCATAATGACAGAAAATTACAAACCCTGTAGTATGGCACTGCATGCACAGGTGCCATGGTAATATTTTATTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249891 lncRNA upstream 4273 15914645 ~ 15921798 (+) True LOC120546249
TU249893 lncRNA upstream 4273 15914645 ~ 15921798 (+) False LOC120546249
TU249894 lncRNA upstream 4273 15914645 ~ 15921798 (+) False LOC120546249
TU249897 lncRNA upstream 4273 15914645 ~ 15921798 (+) False LOC120546249
XR_005636843.1 lncRNA upstream 5157 15914586 ~ 15920914 (+) False LOC120546249
TU249948 lncRNA downstream 118147 16045809 ~ 16047681 (+) True G184584
TU249994 lncRNA downstream 363549 16291211 ~ 16356548 (+) True G184618
TU249989 lncRNA downstream 405393 16333055 ~ 16391851 (+) False nkain2
TU250006 lncRNA downstream 451845 16379507 ~ 16381781 (+) False cenpw
TU250010 lncRNA downstream 473246 16400908 ~ 16404077 (+) True G184628
XM_039781050.1 mRNA upstream 48322 15853810 ~ 15877749 (+) True tmem200a
XM_039781271.1 mRNA upstream 149854 15772660 ~ 15776217 (+) True ccn2a
XM_039782619.1 mRNA upstream 187091 15730047 ~ 15738980 (+) True stx7l
XM_039781225.1 mRNA upstream 206439 15694944 ~ 15719632 (+) False dpf3
XM_039781069.1 mRNA downstream 58421 15986083 ~ 16014859 (+) True itpkb
XM_039781070.1 mRNA downstream 58421 15986083 ~ 16014859 (+) False itpkb
XM_039781072.1 mRNA downstream 89313 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA downstream 97498 16025160 ~ 16042239 (+) False coq8aa
XM_039781210.1 mRNA downstream 181690 16109352 ~ 16126914 (+) True med23
XR_005636865.1 other upstream 209787 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 209787 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 262497 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 607235 15301925 ~ 15318836 (+) True G184458
XR_005636833.1 other upstream 632819 15289674 ~ 15293252 (+) False LOC120546207
TU250012 other downstream 471776 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 837883 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 898032 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 1365992 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 1414175 17341837 ~ 17365977 (+) False map7b

Expression Profile