RNA id: TU249948


Basic Information

Item Value
RNA id TU249948
length 1849
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G184584
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16045809 ~ 16047681 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTGTTATAACCAATTCCTTAGTTTCACCGGATAAACAATCTGCCCATGAACCCCCCAAAATACTTATTCACATTAAATCAAGAACATACATAATTCAGTCACAAGTATTCAGTGATTAAaaccaatattttttaattacaaaTCACCTCAAACAACTTCAAATAAAACCAATGTTCCAAAGTCACAGAAAAAAGCTACAATCCTAAAAtagttaagtgtgtgtgtgtgtgtgtgtgtgttttattacagTGACTTGACACCAAAGCTATGCATGCAAAAAAACTGTACATGGCAGTATGTTCGTTCTACAATCTAGCTAGCACAACAACACCATCATAATAATAAAGTGTCCAAATAACAATGATTCAGATCTGTAAATTGCACCTGAacccaaacaaagcaaaaataaacTCCAGCATCACTGCTAACACTTCTGGGAGAACATGGTCATTTTGTAAGGCATAAAATATCAACATtacagacatcatcatcatcatcctaaTCTGTCTCACATACAAACACTGTACAacataaacacagaaaaacattgGTGTTGCCATCCAAAATACAGCAGTACTCTTAAAATAAAGGCATTTGGATAAGATAATGAAGATATTTAAAACCTACAGGATTACAAAGAATCAGTGAATATGAAGTTTATGCATGAATAAATATATCATGAATTTATCATTCAATCCACATTTGCTGAATCCGTCCCATATTATAAGAGTTGTACTTTAAATAGCATTTTGTCAAATAGCCCGAGTTGAAGTTCATTCAGTTTGTTCAGCAGTAACTGAGCTTCCTACAAACAGTGATTTCGATTTAGTGCCCCACTTTTCTTTAGTGTTGCGTCTGAAGCTATGCTGGTTTTATTAGTTTTGAAAAAGGCtctttgacttttgataggATATTTTGCAGGGAAGTGAGCCAATGATACCGTGCATGAGAAAGCTGACGTGGCATCATGGCAAAGGCTTTGTTTGGATCCATAGTTCCAAGGCAATTtgtgttaaatatttttaaatactcTTGTACATAATAGAATTATCCATCTACACACCTTCCCACACTACACACATTCCCACAGTTATACTGAGGCCATATCATATATTCTCCAACCTCCATTTCCAATATCTCACATACACATTAATACGGACACAATGTACACACCTAAATATTTCGGAATTTAATATTCTTGTAATCTGCTTGCGTGAATTTTTGACTTTACATGGACCAATGCGGCCTCAGACACAAACTCAATCACAGTAACTGTATCTTGGTCATAAGGAGCAGACAGGGTGATGACTATGCTTCCAGAGTGGCATAAAGGTAATTTGATACAATGTTCTAACAATGTGTAATATCCCTCTGACACTGATTTACACGTTTAAGAGGTGTGAAAAATGTAAATCATTTTGCACACAGCCCTGTAATTTTAGGATGACACACATCTTGTGACCAGCTGGTGAGAGTCAGCGTGTTAAAGATGTGTTTgctattacaaaaaaaacattgcctgAAAGGAAAATATTGTAGCTACAATAACTATAGGCTGATCGATTACCACAATTAAGTTCAAACCTACTGAGTATCAGATCCATTTACAGTTTGATCACATGCTCCAGTGGAAGACATGTTTTCTCCACATTCATGGCTTGAATGATTGTCAAATAAGTGATTTTTATATTTAGTGGCAAGGCAGCATGACTTTGTACCATGTGTAAACAGTAACACCTTAGAGAAGATGGAACATGTTTTATTCTGAGAGTTGATTAAGGTGAAACAAATTCACCTCTCAGTGAAGTACCCTACAGTTACTCCTCAGAGCAGCGACGTGGTGTCT

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249901 lncRNA upstream 118147 15926071 ~ 15927662 (+) True G184540
TU249891 lncRNA upstream 124011 15914645 ~ 15921798 (+) True LOC120546249
TU249893 lncRNA upstream 124011 15914645 ~ 15921798 (+) False LOC120546249
TU249894 lncRNA upstream 124011 15914645 ~ 15921798 (+) False LOC120546249
TU249897 lncRNA upstream 124011 15914645 ~ 15921798 (+) False LOC120546249
TU249994 lncRNA downstream 243530 16291211 ~ 16356548 (+) True G184618
TU249989 lncRNA downstream 285374 16333055 ~ 16391851 (+) False nkain2
TU250006 lncRNA downstream 331826 16379507 ~ 16381781 (+) False cenpw
TU250010 lncRNA downstream 353227 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA downstream 354521 16402202 ~ 16404077 (+) False G184628
XM_039781072.1 mRNA upstream 3570 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA upstream 3570 16025160 ~ 16042239 (+) False coq8aa
XM_039781069.1 mRNA upstream 30950 15986083 ~ 16014859 (+) True itpkb
XM_039781070.1 mRNA upstream 30950 15986083 ~ 16014859 (+) False itpkb
XM_039781050.1 mRNA upstream 168060 15853810 ~ 15877749 (+) True tmem200a
XM_039781210.1 mRNA downstream 61671 16109352 ~ 16126914 (+) True med23
XM_039781211.1 mRNA downstream 61671 16109352 ~ 16126914 (+) False med23
XM_039782626.1 mRNA downstream 200413 16248094 ~ 16335415 (+) True nkain2
XM_039782560.1 mRNA downstream 293257 16340938 ~ 16352655 (+) True rnf217
XM_039782561.1 mRNA downstream 293258 16340939 ~ 16352652 (+) False rnf217
TU249895 other upstream 77686 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 329525 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 329525 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 382235 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 726973 15301925 ~ 15318836 (+) True G184458
TU250012 other downstream 351757 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 717864 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 778013 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 1245973 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 1294156 17341837 ~ 17365977 (+) False map7b

Expression Profile