RNA id: TU249989


Basic Information

Item Value
RNA id TU249989
length 3602
lncRNA type read_through
GC content 0.39
exon number 3
gene id nkain2
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16248094 ~ 16391851 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCACATATGCCTGACCAAAGagttgaagaaaaaacaacCCAGAGAAACATCCTCCATGTATACAATAGAAACTGTTTCACCATCTCTGGAACGTTTTGCTCTTTGTGCCTGACACATCAGACACTGGACTTCCAACCAGACTGACCAAGCATCTACTAACAAGACTACCGATATAGGAATGTCAcacatcttcttcttttttctaagGTTACTTTTTGGTGCATTTGGTTTCTTGTTGCTGCAAAGATGGGAGCTCAATACAAGTCGCCATAACATGCTGCACATTTTCTTCTGTTGTTTCATCAGAAACGTTGAATGTCAAGCAACAGTGCGATGTGTAGAGTTATACACTTTTATTccatatgtgcatgtgtataggaaacacacacattcacatacaaAGGCATTAAGcaatgcatacacacaaacacacacacacacatacacacaacagatGTATTAACGTTTTTACTACTAATGTGAATCTTAATGTTTACAATAGAAACTCAGACAGGCAGACTGGGAAACAGACAGGAGACTTAACGTATAGCTGCAGCATCCCAAAGGCCATGGGGTTTTTCTGCCATATTAGCAGTAATACCAACAGGACAGTTGTTCCAGATGTGTCTTTTGGTCTCTTGCTCTCTAAATATTTTGTCTTCCATCCAAGACAGGCCGGTAGAGGTAGATAGAGACAGAACATGACAAAGAAAACAACCCCAGAAGAGGGATTGAGGCAACAGTTTCCCTTCCACTTCAGTCCTTTTGTAGCTCTCCTTGCCAAGCTCCGTCGACACTCGCCCATCTCTTTCGGCAGGCaagttttttcccctttttttgtctgactaataaaaaaaaaggctgttgGCTCAATTAAGTGCCCAATCAGCCTAATCTGCAGTACCTCTTCCTCATACCAGAAATAGTTCCAAATCTTCCACAGGCATTGCttacataaaaagaaaacacacaccttTTACAGAAATGACAATCACAGTCAGAGTGGCCTAAACCTCCTCAtgtattggcattttttttaatcataaacAATGTgataaaaagctgaaaaatgccTGTCATTCCCATGTGGGAACAGAGACACATCGAAGTtaaattatttgattaattattCATGGTTTTGATTGATATATTGCATTTCTAAACTAACTGGTGGATGACAAAGATTGGTGAAAGGAGGAGAAACAAAACGACAGAGGCTGAATCTCTGAAGACACTGCACGCGTTCATCCTCGCCTGCAGACTAACAAGGACAAAAATGGGATGCCAGAGTCGTAGCAGCTCCCTCTCTTCACCTCACCACTCACATTTTAATGTTGAAAGTGCCAACTGTATCACCACATGGACATCTGTAGAGCCTGGTTTCTGAAAGCCACAGACTGGGACCAAAACTAATGGGTCTCAGGTTCACTTTTCTTGGGTTCCCATGTCAAAAGAAATAGCGAGGATATCACAAATCAATACCTTCACATTTGCATTCCATGCGGCTAGCAggttttctcttttattctgCTGAGAAAAATCAACTGATTCCTTCTGGAAATGTAACTAAACATGTTGCATTTGTGTTGCAATCACTGGACCAAAACTTTGATGCCTTCTCCGTCAACCAAGGAACATTTCTGGGTGGAAACACTGACATAAGGATGGACTATTCCACTCTACAAACTACAGAGTCCACCCCCCTCTGCTCAGCACTTCATGTTTTGTAACAAAACTCTGTGGGTTACGAATCAGCGTCGCTGCCCTGTGCCGTGAGGCTCCACTGACTCTGGAGGACAGATACAACAGTTTATGTGTTTGCATGAGGTGTTTCCAAACTGTTGCGTATTTATTCTCATGCTGCGTGTGACTAACTAGCTACTTAAAATGGGAACTGTTTGGTCTGTTGAATGCCCCTCAACTCTCGTCAAAGAGTCCTAAATGTGAACTTTGTGATTTTTCTATAAATAACACTGAAATGTCTGCAGAGTAAAGGAGATAAAATAGCTACTACAATGTAAAACGATGAAATGTAACTTTGAACTTCTAGACGTTTTTTAATCACGTGGCCGTGTTTACTGTTTTTTCTAGTTGACTACTAATGTATTATGTTGTGTACAAGTGGGACTactatgttttatttcttctaATTGTACAGTGTATTTTGAAATGAGAGCGTAAGAGGAGAAAGGGAGGAAAGGGAATTAGTTGCACAATAGTCTGTAATTCTGTCATTAACCATTCTGTCAGGGCTGAAAATTCACTTTCACTTCAGCACATAATTAACTTTAcaatattaatttatatttgaattgtcAACCAACACCACCCGTTGctttttaataaatgaaatgactgTTGATGAAGTGTCTTGTTGCAAAATTCAAATCAGGAACTAATGCTGTGAAAAGGGTCACATAAACAGTACTTAGAAGCTTAATTGAAAAAGATAGTTGCTTGTGTCATTAGTTTTGAATTTGAACTGAAAgtgaattaattcattaatttgtTTGTCTTTAATGGATTTGATCAAGTCAATATCACCTGGCACTGTGGAACCAATACCAACCTAAACGCCTACCTGGCAGATATAAGAGAGGATTTCAGCTATATaatgtgacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcgtgcgtgtgtgcgtgaaaCTTTGTACTGCAGTACATTGTACTTTTCTGTGTCATGGTGAACTGAACACTTAACCCAGAACCTAAAAAGCCATGACTTTAACACAAATGAAACTGAATAAAATCAAAGAACTCATCACAAATTGATAAtcaacagtaataataatatatgtttaAATAATAATGAACACAGCATCTACACAGTTGGTTATTTATCTTCACAGTTGCTTTATCACATGTAGACATTGGAACAGTCAATAGAGCTTTTTGTCTGTAGATCTAAGATCTGTACATAAAGAGTTGAACATTTGCAGAAGAAGTAGGAGGCGAGCCATTTGTTAAATGGCATCAATAAACAGTCAGTCAAGCTATTATAAAGTTCTGAATCTGTATTAAGAGTTACAAAGTTctaCTTAAATGTAGCAGCTTATGTACCAGTTACAGAGGGTTCAAACTGCTCACCTGTTCCTACCTTGCTGATTAGGTTGTTTAAAGTTAAGAAGTTTTCACCATGATCTAGTctaattaataatattttaactggtgtttgtgtgtgcaactggtgtttgtgtgtgcatatttgtaAGCGTACGAGGGGAGGAGAGACTGTATTCCCTCTATTGCGTGAAAGTCTTGTTTTAAtaatggtgtgtgtttgtgttgtgagtGTTGGGTGCTGAAAAGCTACTGGCAGAACCACTGGAAAGTTTTGGCTATATATGTAGAGAGACACATTTGGTTTTCTATTTATTGTCCTAGTACTCTTGATAGGGCTACTATAAGAGCACTGACACATACTTGGACCATCTCGATCTGTCCTcacactgtttttttccccattttgcCTCAGCTGCTATTACTATCAACTTTTCACTGTTAGTGTCTTACCATCTGATTTACCTAAAACAaacttctgtctgtgtgatgTTGCACCTGTGGTTTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249948 lncRNA upstream 285374 16045809 ~ 16047681 (+) True G184584
TU249901 lncRNA upstream 405393 15926071 ~ 15927662 (+) True G184540
TU249893 lncRNA upstream 411257 15914645 ~ 15921798 (+) False LOC120546249
TU250010 lncRNA downstream 9057 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA downstream 10351 16402202 ~ 16404077 (+) False G184628
TU250017 lncRNA downstream 19825 16411676 ~ 16413501 (+) True G184633
TU250220 lncRNA downstream 101343 16493194 ~ 16494494 (+) False LOC120546561
TU250223 lncRNA downstream 101343 16493194 ~ 16499974 (+) True LOC120546561
XM_039781210.1 mRNA upstream 206141 16109352 ~ 16126914 (+) True med23
XM_039781211.1 mRNA upstream 206141 16109352 ~ 16126914 (+) False med23
XM_039781072.1 mRNA upstream 290816 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA upstream 290816 16025160 ~ 16042239 (+) False coq8aa
XM_039781070.1 mRNA upstream 318196 15986083 ~ 16014859 (+) False itpkb
XM_039781549.1 mRNA downstream 95163 16487014 ~ 16490639 (+) True LOC120546559
XM_039782672.1 mRNA downstream 126593 16518444 ~ 16523666 (+) True pgm3
XM_039782618.1 mRNA downstream 136138 16527989 ~ 16534031 (+) True ccnc
XM_039782711.1 mRNA downstream 144460 16536311 ~ 16544495 (+) True faxca
XM_039782712.1 mRNA downstream 144964 16536815 ~ 16544495 (+) False faxca
TU249895 other upstream 364932 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 616771 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 616771 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 669481 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 1014219 15301925 ~ 15318836 (+) True G184458
TU250012 other downstream 7587 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 373694 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 433843 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 901803 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 949986 17341837 ~ 17365977 (+) False map7b

Expression Profile