RNA id: TU249994


Basic Information

Item Value
RNA id TU249994
length 3971
lncRNA type read_through
GC content 0.40
exon number 2
gene id G184618
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16291211 ~ 16356548 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTACCGGTTCCtgaaagaaaaatttaacaggACAGCATGCATTTAGTCAGTCCCTCTGAAAATACGATAAGAAGCGACAACAAACAGGAGGGAGAAAACCTGAAAACAGGCAGGCCAACATgctaacatttattttaaaggtcccaaggcgaggtggagggtgggggtgtggccttgaccaactgccactttgctcatttgaaagccatgatgtctctctctcatgggtgggccaaattctctgggcgggcaaagcagagaaaggggaggtaaccttgctccttatgacctcataaggagaagattccagatcggcccatctgagctttcattttctcaaaggcagagccggatacccagggctcggtttacacctatcaccatatctagccactgggggaccataggcaggctgggggaactcatattaatgttacaaaacctcataaagggaaattttcatgccatgggacctttaaagaaatatttgaAAGCGGAATTTTAGCAAGCCACCATTGTTTTCTGTTGTGGTTCTCCATcaactcctcctcccatcttttcctttctctcGCACTTTCCTTGGGTCTCTGCCCTGGCTGGACGGTGGCTCACATACCCTCGTCTCTGCCTTGTCCAATACTGTACGCCAGTATCTgcatcatcaaaaaaaaaaaaattgctgctgctgtggcaATTGTGCCAAAACAAAACGCTGAATGTGGCAGGACAGACAGTTGACCCCGTCCTCCTTTGTTAGAGATTTTTGGGGTTGCttgttgcagcaatgttggGAGGTGATGCTGCCAGTGTGTAGTGGAGTCTGCATAAAGAAATAGATTTAGAGGCTCTGTAGGATTATAGGAATATGCATTAGATAGTTGAAAGCTGCTTAGAATTAAAAATGACTGAACTTATTATTGCAACTGGGTGGCGGTTTGCATAAGTTgcgtttgcttttttttaaagaaaattagtTCAGAAGTTATCGTCAGGCTGCTGTGCACTGAATGTGGTAGATTACATTTGGATGTTAATTATTAGGTGATCAGGTTTTCAAGGTGTTTAAGAATTGATGCAGTTTGGATTTGTGCAGTGATAAGAGGACGTCTGTCTGCTCGAGACTTTGGATAGTGACATAGTGGCTTTCAACGCACACATACTTAACTCATTCACACTGGCACATGTTGCAAGAAAGCAGACACGCCGAGTGCTGCCAGGAAACAGGAGATTTTCAAGAGCTTTAAAGGTCGTCACCTGGCAGCAGTCATCTTGCTGTCCTTCACTTATCCCTCAATCCTCCCCTCCCTGCTGTCAGTCCTTAGTTTCCAACACGGGTGCACATCCACTGGAGCTGTGGCTGCTCTtcagccacaaaaaaaaagaaaatcatccaAAACTGGATGCTTTTGAGCCTCTGATACGTGAGAATTACACAGGGCTAACTGCGATGCACGCTGCGGTCAAGTACATGCAAGTGGTTTCCACATCACTCgcagatatttattttgtatgtattttttatccCATCACTTCATGGAgcaatcttttcttttcttttttgctccaTCATGAGACATTTATGAGTATGTTTTAAAGAAAGTACAAAAAGATGAGGAGAAGCACAATATATCTGCACATAAAAGATGCTACGGCAAGAAAAATATGTAAAGTGATTTGAGTGAAGATCAATGCATCTTCAAATCTGTTGTGGTTACCAGTGGAGTAAATCCTGAGTGTGTCAACACATTTCATCACTGAATCTTCACTGAAACCAGGATTTAAGGTATGAAAAGCAGGGTTGATGTTCCTGCATGTTGGACATCATTAGCTTCTCTTTTATCCCAGGGATCTGGCACCTTTTCTACATCTGGGAGTAAATAAATACCAACTGTCAAGTACAGTTTAACTGTACATAAAAGGTTCCTAAAGGACACCAGTAATTTATTGTTACACACTGCTTTCGGTAGGTCCTGACTCTGGGTTTGAATCCACTCTCAGGGAGTTTGTTTTCTGTTCACTGTACCCAGGGCCCTCCATCCACATGAGCTGTGACACCGAAATGGCTGAGCAGCACCGCAGAGTCAAAATGTTTCCTGGTGCGTTTCCCCAGAGCTGCTTAGCAACCATATTTAATTTCAAGGAAGTAAAAACACTGTAGTGTCAAAAGAGATCCAAATATCTCAGTGATGCAAATACCATGTGTGTTTCCCAGCATGACTCAGCAGTTTTGCAAACGCTGCTTGGGGGTCAGGGGACGGAAAAGTGGTATAAGAAAATGTATTCGTAATACAGCACTGGGAAACTAAATTTGTAATGTTTGCgccaaacaaaaacattgaaactaTCTACTTAACAATTGTTCACTTGCATCATATGCATTCATGTTTTATCTAACTGCTCAGCTAGTGCTACACTGACATGTTCTATTgctgcatttttttgtttgtttgaatgaAATATGACTGTCAGTGTGTGATGGGCATTTGTACTGTCTTCAGCACAGAAATTGTTTTAATGTACTGTGGACACATAcgtaaatattttattatttccatGGCATTTTACCAAAAACGTTGCCCAGCAGTTTACACTGTATCAATGCTGAACTGATTTGATTAGCTCATTGCCTTAAAATTAACAAATAGGATctttaataattgattaatgattaacataatttatcaagtaacaatacaaaacatttggccAAACAAAGTAAGTAACTTCCTAGGAGCATGAGTTTTACAGTCAAATTTATTTGGCAGTTTTGCTGTGAGACAGTAATTGCAAATATGAATTTGTTTGACCTGGTCAGCTGCATGACAAATGTAAATGAATAATAACATGATAATATTTGTCCTGATTAGCTGCTCATATATGATTTCTTTCACTTTTATACATGTACAAGTGTGTTAATTCTTCTCATGTTAAGAGGCCATGTGGAAATGCCAtcattgctttgttttgttgttgtattcTTACATATAACTGATGTTTAGGTTAAAGttaacatgcaaaaaaaaaaaaaaagttgctctATATCAAGTGATGTGAACGTTAATTTGGCCAATGAGATTTCCTTTGCTGGGTTTGTATTGGCTGGCTGATACCCCTGGCCTTTTTGTTTGTTACAATCCCAGCGATATTGGCATAAATATGCAATAGTGCCTTCACAGCCATTATAGATCAGGGTTTGCCAACTTGTGGTTCAGGGCCCCTGCATGACTCCAAACATTACAAATGGgtgtaaaaatatatcaaagcCTCACCAAGTTATGTGTGTTAGAACAGCTAAAGCAAAGCATAACATATACTAATATGGGGCTCCTAATGTATGGAACCACTGTTAAATATATCTATGGATCTGTTACCCCAACACACCGGGCAATGTGCAGTGCAATCAGCCCCTCGATTAAGAATGTGTGTTTTAAATAGCTAAAGATTTAACCAAACCTCAAAAATAATACAGGTAACCACAATATATGGTTTCAGCTACATCCCAAATACTATAGTTTTGCACAAGTTAAACTGTCACTTTATTTTGGCTCATACAAACCTCACACTTTGAACTCAGCAGTAGCAGAGTGAGCATTGTTTCCAACATTGGATGAGCGTCACAAGGCTGGTATGGACAAAAATGCTCAGTGAAGGAAGTGATTATATTAAAAAGATGTGCAATTTAGGGACAATATATCATAGGTTCATTTCAACTCAGGAGGCCTGTGAATATTGGTTTTGCTGTAAATGGTGTATCGTCAGTAACATCAGGATGGGTTTTCCCCTATCTAGACATGCAAACTTGTTGGAAAACGGCCACATTTTATGTCTATACACCACTTGGTTTTCAAGGGtatttcttttcaaagaaatgtCTTAAACTTGATTACTGTGTTCCTTGTTTGCACTAAAATTCTTCCACCTGCTGCCATCGTTAAAAATGTCTGCTGATATTATTGCTCACTTAGCCAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249948 lncRNA upstream 243530 16045809 ~ 16047681 (+) True G184584
TU249901 lncRNA upstream 363549 15926071 ~ 15927662 (+) True G184540
TU249891 lncRNA upstream 369413 15914645 ~ 15921798 (+) True LOC120546249
TU250006 lncRNA downstream 22959 16379507 ~ 16381781 (+) False cenpw
TU250010 lncRNA downstream 44360 16400908 ~ 16404077 (+) True G184628
TU250011 lncRNA downstream 45654 16402202 ~ 16404077 (+) False G184628
TU250017 lncRNA downstream 55128 16411676 ~ 16413501 (+) True G184633
TU250220 lncRNA downstream 136646 16493194 ~ 16494494 (+) False LOC120546561
XM_039781210.1 mRNA upstream 164297 16109352 ~ 16126914 (+) True med23
XM_039781211.1 mRNA upstream 164297 16109352 ~ 16126914 (+) False med23
XM_039781072.1 mRNA upstream 248972 16016975 ~ 16042239 (+) True coq8aa
XM_039781073.1 mRNA upstream 248972 16025160 ~ 16042239 (+) False coq8aa
XM_039781069.1 mRNA upstream 276352 15986083 ~ 16014859 (+) True itpkb
XM_039781851.1 mRNA downstream 1011 16357559 ~ 16375214 (+) False tpd52l1
XM_039781853.1 mRNA downstream 1012 16357560 ~ 16375214 (+) False tpd52l1
XM_039781849.1 mRNA downstream 1023 16357571 ~ 16370618 (+) False tpd52l1
XM_039781839.1 mRNA downstream 1024 16357572 ~ 16375214 (+) True tpd52l1
XM_039781840.1 mRNA downstream 1024 16357572 ~ 16375214 (+) False tpd52l1
TU249895 other upstream 323088 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 574927 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 574927 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 627637 15660573 ~ 15663574 (+) True rhov
TU249798 other upstream 972375 15301925 ~ 15318836 (+) True G184458
TU250012 other downstream 42890 16399438 ~ 16402103 (+) False G184628
XR_005636928.1 other downstream 408997 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 469146 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 937106 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 985289 17341837 ~ 17365977 (+) False map7b

Expression Profile