RNA id: XM_039781274.1


Basic Information

Item Value
RNA id XM_039781274.1
length 1982
RNA type mRNA
GC content 0.49
exon number 16
gene id si:dkey-177p2.18
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 15788826 ~ 15795638 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGACATTGATCGACTGGCTCTCAGTGGACCCGCAGGGTGTCACTCCGCTTTAGAGGGTGGGAGAGACAAAGTGACAGCGCTGTAAAGCTGAGCATCACATTGTGCATTCTGTAGGGGTGACCCATTGACTGGCCCATACGCACTACTATGGAGTGGCTTTGGATCGCCGTGGCAACATGTATGCTCACGTCCTGCTCTGTCAAAGGCAACGACTGGTGGTGGGAGTATGAGGAGGGGATCCGACACTACAGCAAGGAGGCCCTCAACAAGGAGTTTCCAGAGAAAACTCGGCCGGCGAGCTTCAAACATCCTGTGTTCCAGTGCCCAGACATGAGTCCTTCTCACTCTGTACCCACCTCAGTTGAACTTGTGAAGGCGGCAGATATCAAAGTCATCGCTGCCTTGGGGGATTCACTGACGACGGCCATCGGTGCCAACGCCACCACTGTCCTCGGGATTCCTATTGAGTTCCGTCATGTGTCGTGGAGCATTGGAGGCTACGGGTCATTTCAGGATGTCATTACTTTGGCAAacatcATCAAGCTGTTCAATCCCAATCTGCTTGGTGCTGCTCCGGGCAAGACGGTTCATGGGATGCAGGCTCATATCAGCGAAACAGGCTTTAACCTGGCTGTGACTGGACATAACACCTTCAACCTCCCCGGCCAGACGAGACATTTGATCGACACACTGAGAGGTTATGAGGGTCTGAACTTCGAGAAGGACTGGAAGCTTTTGACCATTCTCATGGGCATGAATGACATCTGCGATTACTGCAAAGATAagGCTCTCTTTTCAGTGGATAACTACATTCACTATATGACCGTGTCCCTGGAAATGCTTCTGAATGAGGTTCCCCGTATGATCGTTAATGTGGTTCAGATCCTGCCCATGCAGACTCTGAGGGAGGTGCAGAAGCCCACTCCGGGGTGCCTGCTACAAAGGTCGTTCTGCTCGTGCCTGATAGAGCCTGAAGCAAAGTCTCGTGAGCTTCAGGAGCTGGTAGAAGTCAATCTGGAGTTCCAGAAAAGACTTGAGTCGCTGCTGTATAGCGATCGTTTCTTCAGGGATGACTTCGCCGTCGTTCTTCAGCCCTTTCTGAAACAAGCTGACCCCCCCCGCCTCCCGAATGGGAAGATCGATATGACCTTCTTCACTCACGACTGCTTCCACTTCACCATTAAGGGGCACGAGGAGCTGGCCAAGGGACTGTGGAACAACATGTTTCAGCCTGAGGGGGGAAAGATGATTGTGAGCAGCTTCTCTGACCCCATCAGTCTCATCTGTCCACCGATGGAACAGCCGTATATCTTCACCCGACCAATTGCAGCCAAGTCAGGTCAGCCTCCACTGCAGTCTGCCGCTCTGTCAGAGGCAGCGTACTTCCTGCTGCTCCTGCTCCTTGTGGGTTTGGCATGTCTCGGACTTCTGTAGCTTTTACTTTGCTGGACTATTTTACAATCATGCTACTGCTACACTGGTCACTGTTGAGGTGATACAGAGGATCACCTGCAAAGGAGAGTCTGTGAGCCACTTTTCTTAGACATTGCATGTCTTTGGCCCCAAATAGCAGCATACAGGAAAGGACTGCAGTGATAAGCTCTGAAACCACGTAGATAATGTGACAGTGAATGCTGCAACCTAAGTATTTCAGCATTAGAGGCAGGTGGAGGTGGTTGTTGGTGGGAAGCTTTCTCTGGATGAAACCATTGCTGCTCAAAGCATAAGGTTTTCTATTTTGCTTTTAAATTTGAATTCATCATCCCTGAACCAAGATGATTTACCTGCTCTGACCACACACTAACTGTGGGGACGATCTTCAATGTTTCACACACATTCGTAATGAGAATAATACTCTGTAGGTGTAATTTTAAGGAGATGTCTGTCCATGAGCTGCTTTAACTACACTGTATTACCTAATATTAATTGCATTAGAGTTTGTAACACGTGAAGCATGAAGtaacacttttttgacatgta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250061 lncRNA downstream 13340 15772686 ~ 15775486 (-) True G184668
TU250055 lncRNA downstream 53544 15734418 ~ 15735282 (-) True G184662
XR_005636867.1 lncRNA downstream 87827 15696500 ~ 15700999 (-) True LOC120546341
TU249791 lncRNA downstream 499941 15283249 ~ 15288885 (-) True G184452
TU249756 lncRNA downstream 614707 15173711 ~ 15174119 (-) True G184420
TU250107 lncRNA upstream 216862 16012500 ~ 16015535 (-) True G184696
TU250117 lncRNA upstream 229580 16025218 ~ 16033730 (-) True G184699
TU250122 lncRNA upstream 242112 16037750 ~ 16042215 (-) True G184702
TU250125 lncRNA upstream 269033 16064671 ~ 16064914 (-) True G184705
TU250126 lncRNA upstream 271120 16066758 ~ 16068271 (-) False LOC120546224
XM_039781272.1 mRNA downstream 3220 15777423 ~ 15785606 (-) True chga
XM_039781078.1 mRNA downstream 65485 15720429 ~ 15723341 (-) True LOC120546258
XM_039781222.1 mRNA downstream 94205 15688518 ~ 15694621 (-) True wdr21
XM_039781227.1 mRNA downstream 108574 15677870 ~ 15680252 (-) True pigh
XM_039781457.1 mRNA downstream 129335 15653902 ~ 15659491 (-) True vps18
XM_039781273.1 mRNA upstream 133 15795771 ~ 15806849 (-) True sel1l
XM_039781047.1 mRNA upstream 12445 15808083 ~ 15830786 (-) False arhgap18
XM_039781045.1 mRNA upstream 12445 15808083 ~ 15829802 (-) True arhgap18
XM_039781046.1 mRNA upstream 12445 15808083 ~ 15829801 (-) False arhgap18
XM_039781048.1 mRNA upstream 12445 15808083 ~ 15829581 (-) False arhgap18
TU249614 other downstream 1209657 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1290456 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2297698 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2320761 13458616 ~ 13468065 (-) True fkbp1b
TU249197 other downstream 2573002 13206307 ~ 13215824 (-) False hmgn3
XR_005636881.1 other upstream 695012 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 1034158 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1966318 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1966760 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1967095 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile