RNA id: TU250105


Basic Information

Item Value
RNA id TU250105
length 1340
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC120546331
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16125385 ~ 16145169 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTGATTGACAGCTCCATCGCTCTCCTGTTGCTAATGTTCGGATGGGACAAACTCCTGAAGGACTTGTCACCTGTATTTTCCCTGTGGGTCGTTCGTTTCACAGGAATTCTAAAACGAGGACGGTGTCACACGAAGCTCCCCACACAGAAAGCGTCATTTACTGAGAGGAGGAGGTCTAAAGCAGAAGTGATGAAGGCAGCGTCATACCTGTTTCAGCGGCAGCACTGAGACTCACagtataaACTCCGTTCCATCTGGCACCATCTGCCCTAATGAACCCATGTATTTGTGTGAATATGTGCTTTGAAAAACAAAGTAGGTGTGTGCGCGTGCTGTGCGGAAGAGGGGGAGGCGACGGCAGAGGACGAAGAGAGTGAGGAGGTGGGGGGCTGaggggtggaggaggaagtggaggCGACGTTGGCAGCTGCTGATGAAGTCTCGATCTTGCTGCTGTGTGTGATGAAGCGCAGTCGCAGCTTCATGGCCGGACGTAAGGTCATGATGATTTTCTCCACCTGGAGAAAGAGAAACGGAGAGTTAAAAGCGAAGAACGGATGTGTATACACAAATGTAGACTGGCAGCAATGTATTGATAACtacaaaaaaagagtaaaagtaAGGTAGAGAAAGAAACTGATCAGTTTAGGAAAATTGACTAAATGCATGAATCTGATTTTGGTTTAAACTGACCTCTACAGTTAATTTCCTGAAGCAGTGGTATAATTACAGTACAGTAATTACCAGGTCAATACGTATCACATTCATTTATGTAACATCTCTTGTTTTGAATCGCATCACCCAAAATACGACACACATAGCTTGAGTTAAGGTTTTGTCTATTAAATTAATTACTTGAAAAGTCCATTTAAATACACATGCCCAAGCCTAAAGCCCAAGTGGAGCTACAGTTTCATCTTTAATTAACTGTGGTGGCAGGAGGTCTGGACACGGCTGGGGAGCCAGCTCGTCTTGCTGCACAGGAGGTGACAGATTCACACTAAAAATGGAAGATGAAAACAAAACCGTCTCCTGAGGAGCTGCAAGTTCACAGATGTCATCTTACTTGAAGTCCGGGTGACGAAGGTCTCcatttttagctttttcatcagtttgttattttattgtattaactTGTTACCGTCTAAGTTTTGAAATGTTTGGTCAGATTTATGGttaattttccattttaatACAAGACACGTTCTCACCTGCTCCTTCACGCTGTCTCCAGTGTACATGTATTTGATGTGATAGAGGAAGTCACAGATTGGGTCCATGTAGCTGAGATGTTGGCAGTGTTGGTCGACCGCCTGGAGCATCTCGTAGAAGGCCACG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250127 lncRNA downstream 24653 16100144 ~ 16100732 (-) True G184707
TU250126 lncRNA downstream 57114 16066758 ~ 16068271 (-) False LOC120546224
TU250125 lncRNA downstream 60471 16064671 ~ 16064914 (-) True G184705
TU250122 lncRNA downstream 83170 16037750 ~ 16042215 (-) True G184702
TU250117 lncRNA downstream 91655 16025218 ~ 16033730 (-) True G184699
TU250143 lncRNA upstream 1421 16146590 ~ 16165157 (-) False LOC120546332
TU250145 lncRNA upstream 1421 16146590 ~ 16165157 (-) False LOC120546332
TU250156 lncRNA upstream 105028 16250197 ~ 16251869 (-) True G184730
TU250157 lncRNA upstream 146221 16291390 ~ 16356567 (-) True G184731
TU250183 lncRNA upstream 234276 16379445 ~ 16382479 (-) True G184755
XM_039782769.1 mRNA downstream 16813 16102053 ~ 16108572 (-) True il20ra
XM_039782021.1 mRNA downstream 26663 16082024 ~ 16098722 (-) False ehd3
XM_039782020.1 mRNA downstream 26663 16082024 ~ 16098722 (-) True ehd3
XM_039781003.1 mRNA downstream 57076 16065854 ~ 16068309 (-) True LOC120546224
XM_039781074.1 mRNA downstream 63478 16045919 ~ 16061907 (-) True stum
XM_039781213.1 mRNA upstream 1487 16146656 ~ 16188330 (-) True LOC120546332
XM_039781212.1 mRNA upstream 1487 16146656 ~ 16187855 (-) False LOC120546332
XM_039782859.1 mRNA upstream 43831 16189000 ~ 16195106 (-) False LOC120547308
XM_039782858.1 mRNA upstream 43831 16189000 ~ 16195105 (-) True LOC120547308
XM_039782657.1 mRNA upstream 63090 16208259 ~ 16231901 (-) True LOC120547182
TU250064 other downstream 333827 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1546216 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1627015 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2634257 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2657320 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 345481 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 684627 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1616787 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1617229 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1617564 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile