RNA id: TU250122


Basic Information

Item Value
RNA id TU250122
length 2718
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id G184702
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16037750 ~ 16042215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTCATACAATATTTTTATTACAACATTTAGTTTGATTAGAACATTTAAACTGAAAAATATGAAATCTAAAGTTGAGATTTCCACTGGAAACTACAGGCACCTTGTGCAACAgaatctttttttcattttttcagcTTTACACCATAGACCATTATAACTGTACTCACACAGCAGAGCAAAGTTTGACAGTCGCACACCAGCCAGGTGACGGAGGATTTAACACCCGAGAAGGCGTGGAGAGATTACCCACTTGTGAAAACAAGGTGTGCCCATGAGCTGAGCTTGTGCGATTTAAGATGAGCTTCTTCCATCCCGGTAGCTCATTAACATTCATGACTAAGCACAGGTCCATGCGTCTTTCTGTCAGACTTCTTACAGTGAGCAACATGGATCAATATGGTTTCATTTCTATATGCTTTTACAAACCGTTAAATCATGCTTTGCtactaataaaaaagaaaaaactgcaTCTGACAGAATTAAAATTCTGAGCTATAATGCTAACATGTTGACAATCAACTGGAATTCACAAGCTAAATCTGCCCCATATGGACAATGGTAGAAGACAAATCATCAGATGGGACATAAAGGGATAAAAATGTACAGCAGAAGCTCTGCAGACTTTCATCCCCAGACCCAAACTGAGTAAAATCACGCTTCAACCCAAGGTTCATTAACATTTACATATTCTGAAAGTCATGTTAAATGTCACTTGAAACCGACTGGTGGTTTAAATCAAAATTCTGCCAATAGAATAATATGTCTCCCTAAAAAGCTATAAACAGCAACTGATATCTGAATTGCTACACTGATACAGAAAATACACACGAGTTAAAAGTCAGCCAGTCTTGTGTGGAAATGCTGACAAATTCCAGTTTGTCACATTTTCTACAAATGGATAAATCACCCTGAACTTGATCGCCTGGCAACATCTTGACAAACTATTTCCTTCTAATCCAAACATTTACTTTGCCGTCTACATTTAGACAAAGCCTTATTATTTATATTCAGACAATCTAGTCAAACTTCCCAGACATGTTGGTCCTGGCCAATACTGTGAGACTCCTACAGCCCATATACTGTAGTCACTCCATTattatgtgactgtgtgtttatatttagATTTGAGTCTTTTTCATTAATCCCATACCATTACATAAAGTTGGTACAGTTGGTTGGATTTTCCAAAAGATCAATAAAACACAGCAATGCAAAACATATTGAAAACATCAGGAGAGATCAATATCCAAACTTTTTACATTCATGTTATAGCTGAACTACTTTTCGCAAGGCTGGCTCTCTTCTTCCATCCACCTCAGTCTTTTCAGTCTGTCCTCTCAGGGCCATAGATAGAGTTTTGTCTTAATACACTCCAGACGCCATGTTGCCGCTCCCTCTCAAACAAAGAAATGATGGATGTAAGTACATACAAGTGCTGTTGAAAAACTCATCGTAGTGGGTTTCCCAAAATGGGAAAGATAAGCTGATGGTCGATGACTATTTAAGGGCAGGTAACATGGCATCTGCTTTGCTGTTGTGCGTCTTCACAACACAACCTCACCACTGGCTTGCACTTTGCCATTGGCCCCAGGATCTGTCCATCAAATCGCCTGACACTTGGGATTGGCTAAGGCTTAGTGAGAGGGTGGTGTGCGGCCTTCCCAGTACTTCTGATATGCTTTTTGGAACATGTCCTTACATTGCAGCTTTGCATTCAGCCGGGAGCAGATAAGGAACGAGCCGCCCATCTTACGGTGGAGTGAGTACGTCTCCTCGGGAGGGGGGGTGAGACGGTGTTTGAGCATTACAGGGATGAGGTTGTGGATTCTTCTCGTGGTGGACTGGGAGCCAAATTCAAATGTGTCTGTGGAGGCGAAGGCCTCACCGAGGATCATCACCGCATCCACATGGGCAATTATCATTGCCTTGGACTCATACCCAGTCAGGAACTTCATCTCGATAGATTTCTTCAGAACTCCCTCTCGGTCGCCCTCGGCAGCTGAACGGATTACCTCTATGTAGGCATCTGTGAAACTCTGATCGAATCCTCTCGTGGCTCCAAAGTCCAACAGCGCCACcctgtgtgtctgtggatcGTAGAAGAAGTTGGACCAGTTTGGGTCAGTCTGCATGTACCTGAACTCAAGCAGCTCTCTGAGGCACAACGTCAAGATGTTCTCACAGATCTGAGACAGAAACAAACACGAGGACGTGAGGAAAGCAGGGACTTGTGGGAGGAAATGAAAGGAGAGGGGAGAAAATGGGGTAAAAGTGGAAACAGGTGGGtaaggctgggcaatatatcgatattatatcgacatcgatatatgagaTTAGATATCATCtgagattttggatattgtaatatgaccGACAacgtaagtgttgtcttttcctggttttaaaggctgcattacagtgaagtgatgccattttctgaacttactagCTGTTGTATTTGCCtttccccacttagtcattgtatccacattgttagtgattatttatcaaaactctcattgtgttaatattttgtgaacgcACCAATAATCacccctacaatatcgccgcaatatccaCGAAAATATTGtgagattttattttatcacaTGGACCAGCTCTACAGGTGGAGGCAGAAGTACTTCCCTTTCCTGCCACCAGAGACCCATTCATCCATGTAGTTATTGATCAGAAAGAAACcagttctgacacacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250117 lncRNA downstream 4020 16025218 ~ 16033730 (-) True G184699
TU250107 lncRNA downstream 22215 16012500 ~ 16015535 (-) True G184696
TU250065 lncRNA downstream 244938 15792286 ~ 15792812 (-) False si:dkey-177p2.18
TU250061 lncRNA downstream 262264 15772686 ~ 15775486 (-) True G184668
TU250055 lncRNA downstream 302468 15734418 ~ 15735282 (-) True G184662
TU250125 lncRNA upstream 22456 16064671 ~ 16064914 (-) True G184705
TU250126 lncRNA upstream 24543 16066758 ~ 16068271 (-) False LOC120546224
TU250127 lncRNA upstream 57929 16100144 ~ 16100732 (-) True G184707
TU250105 lncRNA upstream 83170 16125385 ~ 16145169 (-) True LOC120546331
XR_005636864.1 lncRNA upstream 83286 16125501 ~ 16145162 (-) False LOC120546331
XM_039781056.1 mRNA downstream 57550 15921621 ~ 15980200 (-) False epb41l2
XM_039781064.1 mRNA downstream 59358 15936698 ~ 15978392 (-) False epb41l2
XM_039781066.1 mRNA downstream 59360 15921621 ~ 15978390 (-) False epb41l2
XM_039781065.1 mRNA downstream 59360 15921621 ~ 15978390 (-) False epb41l2
XM_039781062.1 mRNA downstream 59360 15921621 ~ 15978390 (-) False epb41l2
XM_039781074.1 mRNA upstream 3704 16045919 ~ 16061907 (-) True stum
XM_039781075.1 mRNA upstream 3704 16045919 ~ 16061906 (-) False stum
XM_039781003.1 mRNA upstream 23639 16065854 ~ 16068309 (-) True LOC120546224
XM_039782021.1 mRNA upstream 39809 16082024 ~ 16098722 (-) False ehd3
XM_039782020.1 mRNA upstream 39809 16082024 ~ 16098722 (-) True ehd3
TU250064 other downstream 246192 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1458581 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1539380 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2546622 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2569685 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 448435 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 787581 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1719741 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1720183 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1720518 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00003438 True 3397 mRNA 0.45 14 CM030121.1 3356883 ~ 3396478 (+)