RNA id: XM_039781213.1


Basic Information

Item Value
RNA id XM_039781213.1
length 4136
RNA type mRNA
GC content 0.44
exon number 10
gene id LOC120546332
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16146590 ~ 16188330 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATAGTAGCTGCTTCCAGTCTGCAGTCCTTGTTAGCGCGTTCTGTGGagctaaatgttattttaattattcttttggatttttttctgACAAGGACTGCCAGCGATGAGAATTTTGCACCAACGACATAATGATAAGTTATCATAAATGACATTCCGGTTATTTTTGTCAATTAGCTGTACAACAGTTAGctaacagttagctagctagctcaacAGATGTTCTGCAGTATGGCTGTTTGATTCATTTCAACAGGTAGCTACAGGAAGGCAAAGTCTTTCTCAAGAGGTTTCTCATCGGTAACTATCCCGAGGAGAGTTGTAAACTAATATTCTCTGTTGCGGCTAGTTTAGCTATAGTTAACTGAAATGTCTGTTCAACTCATCGACTATGGTTCAACTGGGTAGCTATTAACGTCAGTTGTACGTTAGCTAAAGTTAGTCAAACTTAGTTGTGAGATGAGCTAACTGTGTGTCATGCTCATCGGTCGTGTCCTGTTGAGCCCGATCAGATCGACGTGTTCAAAAATCGTGTGTTTACAGAGGGTTGTTGCCTTCACTGAACTATCATTTCGCAGGCTGCATGCCAAATCAACCAGTCACTGTTGTAACGTAAGCGCGCTGAAGCAATCCGCACACCGGTCCAGACTTAAGGAACAGTCCTGTTATCAGCTATACGTTTGTGATATGCAGCAAGCCGATATCTCATCAGGCAAAGAGACCACTGCTAATGCCTCAGATGATGACGATGAGGAGGAGGGTGATGGTGAATGTGTGGGGGCAGAAAATAAGGAGTTGAAGAATCAGATGATGATTCCAGGTCAGGTGGATGCAGTCACCATGGAGGTCCAACAAGACCCTGGAGCCTCCACAGTGTCAGCTCCAGCAGGATCGAGtgagaagaagaacaagaggaagatgaggagggagaagaggaaacTGATGAAGAAACAGCTCAACTCTGCTGATACTTCGGACAATTTCATGTCAGAGCTTCCATTTTCTCTGACCAGCCCCTCTACATGGAAAGAGCTAggatTCTCCAGCCCAGAGTCAAtccagaagaggaagaggaagagaggagacatTGAAGGGCGAGTGGACAGTGAAGAGGATGCAgagaacaagaagaaaaagaaagagaccaAGCGACCCAACTACTTTATCTCCATCCCCATCACTAACTCACAGATCAGTTCAGCTGTGATTGCGGTCCAAGAGGCGGTGCTTCAGCAGGAGAGCCGATTGGCCAAAGCCATGATCCCTGTCCCAACTCTCCACATCACGCTATTAGTCACTCATCTCGCCAGTCAGGAGCAAGTAGACCTGGCGGCAACCGTTCTGGCTCAGGTCGAGCCGTCATTGGCTGAGCTGCTGGGTGGGAGGGATCTGGTGCTGCCCTTCTCAGGGATCAGtcatttcaggaaggaggtgGTGTTTGTTGCGCTGACCCCcggacaacacagacacacactggaCAGTCTGGCAGAGTTGTTGCGGAGCCGTTTTGAGGAGCAGGGTCTTCTGCAAGAAGGAAATCGTGGGTTTGAGCCCCACCTCACCATTATGAAGCTATCCAGAGTATCAAAACTACGATCCCAGGGTATAAAACGTGTGGACCCAGCCCTCTACTCCAACTATACAAACAAGTTTTTTGGAGACCAGACAGTCGAGCGGCTGGATCTTTGTTCCATGTTGAAAAAGAAGCAACAAGACGGATATTACCACACAGAGACTTCACTACAACTTGGTGGGCGTCGCCGGTCTGAGCCCGATGAGGCGGAGCTACTAAGAGTCAGCAGGCGATTGGTCGAGGATGCCGTCAATCGTGCCTTGCAACAGTTCAAACAAGAAACGCTTCAAAACGGGGGCGGGCCTAATGCCACGACACTACAGCCCCCtggaaacactgaaaacactgcAACAAAGACGGACACTACAGCTAACGCCACCACAggcaacaggaagtgacatcatcgGACTGAGGTACAGAGACTGACAAAACCAGCTGCCCAGAAAAAATCAGCCAGGCCTGGCCTGCCAGGAGAAGAGTCAGTAAGCCCTGGGCACAAAGCCTGAACCAGCCTACCAGTCAGCCCAGTTTGCTGACTAGCTAACCCAGCTAGCCAACCGCAAACGGCTAGCCAGTCATGCTAGCTAACTGCCCTACCTACTGACCAAGCCTGACACAGTGCCAATATATAGATACTGTAGCTTGAGTTCAGTGCTAGGTGACGGTCCCAACAGGCCAGCTGGCTAAGCCTGTCCGTTAACTCACTACATCCAACAGCAAGGATATCGTCCCTCAATCCTCACTCAGCTGCGTTTGCACGTCAAACTCAAAACTCAGCAAACATGTGAAGCACTCCTctagagacacacatgcacacgtagGGTTCACTTTAACCTGTCACTCACAAACTGCCCCTTTAAGAATAAGATCAGGTTTTGTAGACAGTTTGCTTTACTTATGCAAGTTGTTAGCCCtttcaaataaaataacacTCCAACAATACACTACAAGTTGCCAAGAAAGCAATTTTACTCCATTAACGCCAAAACCTCTATTAATGAcctgggtgtttgtgtgtggcagGCAATTATTACTATTACACACAGCAAGTAACTCTGCTTCCTGCCTGATCACATataaatgtcattattttttgGTTCACATACTATAttgtctgttctgttctgtGAAATTAATTTGAAGCAGCAGCAAAATGCACACATGCTTCCAAGTGTTAAATCCATTCATAcatgtttgtggtgtttaagTCTATAACACAGACTGAAGCCTCGCTGTTTGTGGCTCAGTGTTCATTTGGAGTATTTATGCTGATCCATAGAGCTTTTATTCTGCACGTTAAAGCATTTACAGCCAAGCAAGTTCTTCAGATGGTGATGCTGATGTTGGGGAGGTTAACTCAGACAATTACTGCTGTCAGCTGAAAACCCTCCGGCTCTTTATTTCAGCATCTTCcatcaatttattattattttttgttaaacTTGAAAATGAAATTGGCCTTTCGTGCTTTGCATAACCCCCGCTCATGAAATCCATTCAGAAACACTCAGGCATCGGTGTGAAATTAAGGGGGATTGTCGTTAAGCTTGACTTCCTGGAGATGAGGTTTTCGACTGACAGCAAGATAATGATGATACAGCTATTCAAAAAGTGATTTGTTTACCCTCTGacattaaatgttattttatcctttctaacttttatttataatgCTTTGCTGTCCCTGTTAGAGAAATTAATTTCATGTGAAAAGATGAGAAGCTATTTAATTttgaaatgagaaaaagagcATTCACTTTGTATTGAAAGGTGGAAAAAGCACAAAATgatgaatttgttttttaatagtcttaggttttagtttttaaagagCAGGTAAATGGATACATGCTGTTAAATCCAATCAACTCTGTACAAAGTCACTAAAACAAATCAATGTGTCTGCAAGTGCTGAAGTACATAGGTGAGATTTTGAGCCATTGTGGGGTGATCTTAAATGAAAACCTGTTGCTAAAGATTTGGATTTTTGAGTTaatgtaacaaaaaaatgtcCACCGTGAAACGCAGTTCATCTCTTTTCTATTATAAGATAAATATAATTTCTGAGGAACAGAGAGACAGTTTGCCAGCTCAGATTTTCAGCCATGTGAGGTTTATTACCCTCGAGTGAAAACAGGTGTGAGCTGGAAAATGTGCTCTCATCCCTGTGAAATCCACTTAAGTCCTGTCACTGTGGACTCATTCAGACATCAATAACAAAAGGTGAATTCTGTCTTTAGGTGGACTTTGAGCGTTTTAGTTTTGATCTTTATCGTCACCGGATCCTTAATCTCCTTAAAATCCCCTTTAATACACAagttgtcgtgtgtgtgtgtgtgtgtgtctgtgtgtgttcacacagtgaCTGTAGGATGTTTGACCAGCAGTTTCCCAGAGAAATTCTTGTCTATCAATCATGACAACTCAGAGCTGACTGTGTGTGAAAATCTATAAGTTTGTCTTTCCATTTGTCCGTGTGTACGTCTGACTGCGTGGTTGTACTGTGTTGTATATCTTGTTCTGCCATATTTGAACAATAAAACAGGATATGAGATTCAAAACCAA

Function

GO: NA

KEGG:

id description
K16524 AKAP7; A-kinase anchor protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250105 lncRNA downstream 1487 16125385 ~ 16145169 (-) True LOC120546331
XR_005636864.1 lncRNA downstream 1494 16125501 ~ 16145162 (-) False LOC120546331
TU250127 lncRNA downstream 45924 16100144 ~ 16100732 (-) True G184707
TU250126 lncRNA downstream 78385 16066758 ~ 16068271 (-) False LOC120546224
TU250125 lncRNA downstream 81742 16064671 ~ 16064914 (-) True G184705
TU250156 lncRNA upstream 61867 16250197 ~ 16251869 (-) True G184730
TU250157 lncRNA upstream 103060 16291390 ~ 16356567 (-) True G184731
TU250183 lncRNA upstream 191115 16379445 ~ 16382479 (-) True G184755
TU250201 lncRNA upstream 245771 16434101 ~ 16434513 (-) True G184762
TU250257 lncRNA upstream 262424 16450754 ~ 16535319 (-) False G184801
XM_039782769.1 mRNA downstream 38084 16102053 ~ 16108572 (-) True il20ra
XM_039782021.1 mRNA downstream 47934 16082024 ~ 16098722 (-) False ehd3
XM_039782020.1 mRNA downstream 47934 16082024 ~ 16098722 (-) True ehd3
XM_039781003.1 mRNA downstream 78347 16065854 ~ 16068309 (-) True LOC120546224
XM_039781074.1 mRNA downstream 84749 16045919 ~ 16061907 (-) True stum
XM_039782859.1 mRNA upstream 670 16189000 ~ 16195106 (-) False LOC120547308
XM_039782858.1 mRNA upstream 670 16189000 ~ 16195105 (-) True LOC120547308
XM_039782657.1 mRNA upstream 19929 16208259 ~ 16231901 (-) True LOC120547182
XM_039782791.1 mRNA upstream 187556 16375886 ~ 16379169 (-) True hddc2
XM_039782799.1 mRNA upstream 212932 16401262 ~ 16409291 (-) False LOC120547270
TU250064 other downstream 355098 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 1567487 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 1648286 14472201 ~ 14498370 (-) True G184299
TU249319 other downstream 2655528 13481924 ~ 13491128 (-) False mfsd2b
TU249306 other downstream 2678591 13458616 ~ 13468065 (-) True fkbp1b
XR_005636881.1 other upstream 302320 16490650 ~ 16517872 (-) False snap91b
XR_005637006.1 other upstream 641466 16829796 ~ 16835983 (-) False gpatch2
XR_005637059.1 other upstream 1573626 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 1574068 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 1574403 17762733 ~ 17762808 (-) True LOC120547353

Expression Profile