RNA id: TU250341


Basic Information

Item Value
RNA id TU250341
length 305
lncRNA type inter_gene
GC content 0.53
exon number 2
gene id G184851
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 16724877 ~ 16726392 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTCTTGCTCTGTGGCATTAGAATAACAGCCGTCAAACTTAAACATATCCACCTCCCAGTCAGCGAATGTCTGAGCGTCTATCTTGATCTTGTCCAGTGTTGTGCCGGGGTAGCCCCCACAGGTGTGTGTGCCCATGTCCCCGTAGAGGCCCAGCTTGAGACCCCTGTCATGCATGTAGCGTGCCAGTTTGTGGATGCCTCCTGGGAATCTTTTAGGGTCAGCCTGCAGCCGTCCATTCTCGTCTCTCTTCATGGAGGACCAGCAGTCATCTATGTTCACATAGACGTAGCCAAGTTCCCTCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250330 lncRNA upstream 38798 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 114497 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 208544 16501866 ~ 16516333 (+) False LOC120546561
TU250222 lncRNA upstream 222990 16495957 ~ 16501887 (+) False LOC120546561
TU250223 lncRNA upstream 224903 16493194 ~ 16499974 (+) True LOC120546561
TU250480 lncRNA downstream 207304 16933696 ~ 16956864 (+) True G184948
TU250541 lncRNA downstream 554723 17281115 ~ 17299420 (+) False G184995
TU250533 lncRNA downstream 562459 17288851 ~ 17292275 (+) True G184995
TU250540 lncRNA downstream 562459 17288851 ~ 17291556 (+) False G184995
TU250579 lncRNA downstream 667142 17393534 ~ 17397048 (+) True G185022
XM_039781919.1 mRNA upstream 38799 16671589 ~ 16686078 (+) False vegfab
XM_039781921.1 mRNA upstream 38799 16671591 ~ 16686078 (+) False vegfab
XM_039781920.1 mRNA upstream 41596 16671586 ~ 16683281 (+) False vegfab
XM_039781926.1 mRNA upstream 115151 16605386 ~ 16609726 (+) True rsph9
XM_039781925.1 mRNA upstream 115151 16605539 ~ 16609726 (+) False rsph9
XM_039781964.1 mRNA downstream 3671 16730063 ~ 16744830 (+) False LOC120546775
XM_039781962.1 mRNA downstream 3696 16730088 ~ 16744380 (+) True LOC120546775
XM_039781963.1 mRNA downstream 7585 16733977 ~ 16744830 (+) False LOC120546775
XM_039781814.1 mRNA downstream 19781 16746173 ~ 16763444 (+) True wdr26b
XM_039781862.1 mRNA downstream 39153 16765545 ~ 16779935 (+) True si:ch211-57i17.1
TU250012 other upstream 322774 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 756754 15914645 ~ 15968123 (+) False LOC120546249
XR_005636865.1 other upstream 1008593 15694944 ~ 15716284 (+) False dpf3
XR_005636866.1 other upstream 1008593 15694944 ~ 15716284 (+) False dpf3
TU249859 other upstream 1061303 15660573 ~ 15663574 (+) True rhov
XR_005636928.1 other downstream 39153 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250355 other downstream 99302 16825694 ~ 16833314 (+) True G184859
TU250543 other downstream 567262 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 615445 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 615445 17341837 ~ 17365977 (+) False map7b

Expression Profile