RNA id: TU250524


Basic Information

Item Value
RNA id TU250524
length 574
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G184989
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17169689 ~ 17170262 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGAAAATCCTCAGTGTAGAGCAGCCTCCACACACATACCACCAATTTCCTGAGGAGTTAATGAGTGCTACTTTAACATAAAATTAATAATGGTACACATGCCAaaagactcaaacacacacacgcattcacACATCCAGCCTTAAAGTGGTTACTGTTTCCGACGACAATTCCCTATTTCCACCAATGACACAAAAGCCGGCCAAGAAAAACACATCATATATAGTAAAACGCTGACAAATTGCTGCCCTTTCTGGTATTTTTTCTCGACATTTGATTCCTTCACACTCATTTCAATGCTGTCTATCACTTCTTGTCTCCTCCTGTACGCTTCAGTCTCTCACACTCACCTCTCAGTGACCCATGCAGAGTTTTTATTCTCGTCCACCATCACACCAGACTTAATGGACTAGAAGGATaggctcttctctctctttggcTCTGTAccctcttctgtctgtctgcatgccTCCTAATAATATGCTCTGTTTTTAACATATGCATTTCTTAAATATATATCTGGGGAATCAACACTTCAGTGTTTGGCAGTCCATGCAGGAAAAATACACCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637020.1 lncRNA downstream 233508 16933693 ~ 16936181 (-) False LOC120547043
TU250501 lncRNA downstream 234064 16933693 ~ 16935625 (-) True LOC120547043
XR_005637021.1 lncRNA downstream 234107 16933693 ~ 16935582 (-) False LOC120547043
TU250410 lncRNA downstream 345092 16824296 ~ 16824597 (-) True G184903
TU250404 lncRNA downstream 395418 16772721 ~ 16774271 (-) True G184897
TU250586 lncRNA upstream 96097 17266359 ~ 17269604 (-) True LOC120547341
TU250583 lncRNA upstream 96155 17266417 ~ 17269604 (-) False LOC120547341
TU250603 lncRNA upstream 142223 17312485 ~ 17332973 (-) True G185031
TU250616 lncRNA upstream 191747 17362009 ~ 17362903 (-) True G185039
TU250631 lncRNA upstream 226209 17396471 ~ 17399451 (-) True G185054
XM_039781405.1 mRNA downstream 204322 16956248 ~ 16965367 (-) True ddx1
XM_039782409.1 mRNA downstream 213752 16937777 ~ 16955937 (-) False LOC120547041
XM_039782407.1 mRNA downstream 213752 16937777 ~ 16955937 (-) False LOC120547041
XM_039782408.1 mRNA downstream 213752 16937777 ~ 16955937 (-) False LOC120547041
XM_039782406.1 mRNA downstream 213752 16937777 ~ 16955937 (-) True LOC120547041
XM_039782861.1 mRNA upstream 8102 17178364 ~ 17180711 (-) True lratd1
XM_039782915.1 mRNA upstream 97103 17267365 ~ 17269634 (-) False LOC120547341
XM_039781812.1 mRNA upstream 99599 17269861 ~ 17287641 (-) True scml4
XM_039781811.1 mRNA upstream 99599 17269861 ~ 17287638 (-) False scml4
XM_039781813.1 mRNA upstream 120904 17291166 ~ 17306226 (-) True sec63
XR_005637006.1 other downstream 333706 16829796 ~ 16835983 (-) False gpatch2
XR_005636881.1 other downstream 651817 16490650 ~ 16517872 (-) False snap91b
TU250064 other downstream 1378131 15788914 ~ 15791558 (-) False si:dkey-177p2.18
TU249614 other downstream 2590520 14571755 ~ 14579169 (-) False naa30
TU249578 other downstream 2671319 14472201 ~ 14498370 (-) True G184299
XR_005637059.1 other upstream 591694 17761956 ~ 17762038 (-) True LOC120547356
XR_005637061.1 other upstream 592136 17762398 ~ 17762482 (-) True LOC120547359
XR_005637056.1 other upstream 592471 17762733 ~ 17762808 (-) True LOC120547353
TU250856 other upstream 594543 17764805 ~ 17766640 (-) False zgc:153284
TU250853 other upstream 594660 17764922 ~ 17766640 (-) False zgc:153284

Expression Profile