RNA id: TU250533


Basic Information

Item Value
RNA id TU250533
length 2620
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G184995
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17281115 ~ 17299420 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttttatttgaaatgattttaaatacaaataatatactTTTCCATTTACAATGACAGTTCCTTTGTAAACAAAAGTGGCAGATAGATAGTCATTATTGGGTAGTTTGTCCAAACTGAGGCGGCCTGCCGGCCAGTCGCCTGGACAAGGTCTGTCATGGGAGAGATGGTGTCGCATTTAACCtcactgcagttttttttttttttttccccacacagCGTCAATCACTGATGCTACATTCTATTGCAGAGCGATCAATACTCAAGAGTACAATATAACCTGTTAACATACACCTGCTTTGAACACAATTACGGGAGAGTAGTGGCGTgcatgtgagtttgtgtgtatgtggtgtcaGGAGAGTGTGTCCAGAAATATTCATACCTTTATCTCTCCCACACTAACATGACACACAAGTATATACGGCAAAAGAAAACTTGTAACTGTTGAAAGCAGATATTCATGGTAAAAGATTAGTCATTTCTTTTAAACACTGTAAAGTCATCAACATACAGGAAGAGCCCATAGAGCTAAACAAGGAAGctctgatttctttctttttttgcactCGTGAGTCTAACGCATGTAAAAAACCAAGGTTAGATTggaacaaaacaagacaatgTGTTGCATGTTATAACTAGAGCTTAAGTGAGATGAAACAACTCATTTTGAATGAAAGGGGGTTCTTTTGGCTGGCCAGAACTGTTCTGTAttccacagacagacaaaccttTCCTTCTGAAATGGCAGTTGCACTAACAAAACTGAGCTTGTTCCGCTTTAATGAACAAAGAGAAAATGTGCTGGACAGAATATGCTTAGTCTTACACGAAAAGTTCCTTTTGACAGGTTCTTGTTAGCAACACTTTCATCCAGCTCATGAGTGCTGTGCGTGTCAGGGACCTCATACTCCAATCCCTTTAACACAGGGCCGCTCACATCACATCACGTACGATTGCTAATCCTCTTCCAGCGGGCAAAACTTCTTATTAGAGGCTTTGTCGTAGCAAGATCAGTGATATGTATACCAAGACTGGTGGAGCTAGAGTTTACTATgaagaaacaaaaacacttacaaaacacaaaagaagtttttttctgctttcccAAGAACCTCTGGCGCATAGCACCCAAGGACTTGTATGTGGTGGTATTTCAGTTGTATTCATAAGGCCTTTTTGGACAATGAGTATACACTGGAATGTGCTACAAttgtaaaaggaaaaaaaggatgAAGAGAAAGGAAGTCACTTCACTGGAAAGCCACAAGTATGTATCAGTATCTGAGCCCCTTAAAAAGACTGAAAACTCACAACCTGAATGTAGTATATGGACAAGAAGAGTACTCAATAATTCAAACAAATCTTAACACTGCAAGTTTTGCCATTCCCCATTATACTTGAGGTCAATTCATTTCAAGAGCCACGTGCTTTCAACCTTTTCAAACAGTTTGGCGTGGATCTCAGGGGCAGAACAGGCATCACTAACAGAACTGACTGGAGATCAGTGTCTATTGGTAGTCGTCTCCTTAAACATACAGTGAGTATAAGTACATACAAGTGACTGGCTGGTTTTGacagcgaaaaaaaaaaagaatgaaatgtGAAGAGACTCAACTGTGCCCCCCGTGCTCTGAAAGGAGCAAACGTCCCAATGGTTGACGTGATCCGCGACGAAAAGGGCTAAGGCTCTTCTGCAGTTTTAAGTGTACATTAGAAAGTATCATTTGCGTGGAAAACATCAGTGCCGAGTGATTTTTAAAATTAGGAGCAAGAGCGAGGTCATGATTTCCATATGGAGGTCatgtatttttgtaaattttgcAAACGGAATTAGTTGTTCTAcatccccctctccccctcaagaaaagaagaaaaaaacaaccagaTAATAGGTCCTTCAGTCCACAGTGTGTCAATCGTTCATACCTGTACAAACACATAcaaggttacacacacacacacacacacacacacacacacacacacacaCACCGGTAAGTATTCACAGAATTCTCTTCCGCCAGCAACGGAAAGAAAATGAACAAGTCTCTGTAGAAAAGGGGAaatggaggggagggggggtcgCAGTCCATGAAAAGATAAAAaggaaggagaagaaggagggaTCTGTGTGTATAAATTGTCCCCGGTAattctgtgtgtgcgtttggtgtgtgtgttgcaggcaCAGCTTTACTGCTCCTTGTTCACTGCTCTTGGGTACTGTTTGGGGCGGggggctgagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtgtgtgtgtgtgtgcgtgtgtatccgCATTCAGTCGTTGTCCTCGTCATCGTCCTCGCTCTCCTCGATACCGTCGCTGTCCTCCtgctcctcgtcctcctcctccgtgTCTGGGATGTCCCACTGTGGGTGGTTGTCCAGCATGGCTTTGGCCTCGTGGACCTCCAGCTTGAGTGGTTTGATCTGGTCCAGTCCCAGGTAGGAATCAGAACGAAGGATGACAGAATATTGGTAATTGCCTGTTTTGGAGGGGGCTGGAAACTTCAGCTCCACCTGgggaacaacacacacaaacagctgtcAAAAATCTAATCACACGAGCACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250480 lncRNA upstream 331987 16933696 ~ 16956864 (+) True G184948
TU250341 lncRNA upstream 562459 16724877 ~ 16726392 (+) True G184851
TU250330 lncRNA upstream 602772 16681895 ~ 16686079 (+) True vegfab
TU250247 lncRNA upstream 678471 16595940 ~ 16610380 (+) True G184796
XR_005636882.1 lncRNA upstream 772518 16501866 ~ 16516333 (+) False LOC120546561
TU250579 lncRNA downstream 101259 17393534 ~ 17397048 (+) True G185022
XR_005636901.1 lncRNA downstream 137745 17430020 ~ 17447803 (+) True LOC120546618
TU250569 lncRNA downstream 146414 17438689 ~ 17440600 (+) True G185015
TU250565 lncRNA downstream 148866 17441141 ~ 17447316 (+) False LOC120546618
XR_005636900.1 lncRNA downstream 150154 17442429 ~ 17447803 (+) False LOC120546618
XM_039781403.1 mRNA upstream 154435 16965466 ~ 17134416 (+) True nbas
XM_039781404.1 mRNA upstream 154435 16965466 ~ 17134416 (+) False nbas
XM_039782392.1 mRNA upstream 408516 16876320 ~ 16880335 (+) False fam228a
XM_039781016.1 mRNA downstream 20199 17312474 ~ 17331367 (+) True ppp1r14c
XM_039781338.1 mRNA downstream 58916 17351191 ~ 17375059 (+) True map7b
XM_039781013.1 mRNA downstream 85907 17378182 ~ 17391719 (+) False mtfr2
XM_039781012.1 mRNA downstream 86690 17378965 ~ 17391719 (+) True mtfr2
XM_039781011.1 mRNA downstream 86690 17378965 ~ 17391719 (+) False mtfr2
TU250355 other upstream 455537 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 512250 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250012 other upstream 886748 16399438 ~ 16402103 (+) False G184628
TU249895 other upstream 1320728 15914645 ~ 15968123 (+) False LOC120546249
XR_005636866.1 other upstream 1572567 15694944 ~ 15716284 (+) False dpf3
TU250543 other downstream 1379 17293654 ~ 17295701 (+) True G184996
TU250558 other downstream 49562 17341837 ~ 17365977 (+) False map7b
TU250559 other downstream 49562 17341837 ~ 17365977 (+) False map7b
TU250758 other downstream 376897 17669172 ~ 17672886 (+) False G185145
TU250755 other downstream 390283 17682558 ~ 17686398 (+) True G185145

Expression Profile