RNA id: TU250758


Basic Information

Item Value
RNA id TU250758
length 478
RNA type TUCP
GC content 0.45
exon number 4
gene id G185145
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 17669172 ~ 17686398 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATGTTAAGATGTGAGACAAGAACTGGTTCTCTCAAGTCAAGTGTTTGTGACAGAACAAGTCCTCAACTCATTTTGTAAGCATTTGATCTACTCTGAAGACACAATATGATCTCCATTACTGCTGAAaaactacattttgttttttatttgtcaatagGTCTACTGAGTCTACCACTGCTTACAGAATATGTGAGAGTGGTCAACGGAAGCAATCGATGCAGCGGTCGAGTGGAAGTCCACCATGATGGCAACTGGAAACGAGTGTGCAATGACTGGACCAAGGCAGACGCTGACGTGGTGTGCCGAGAGATTAACTGTGGCACTCCTGTCGATCAGGCTGAAGTGCTATATTTTGGAGAGACACATGACCTGGGTGGCGTCAAACCCAAGTGCTTTGGGAATGAGAGCTCTCTCTCACAGTGCAGACTTCAGGAATTCAAGGAAAGCTGTGTCGATGCTACTGTTGTCTGTACAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250737 lncRNA upstream 1452 17633119 ~ 17667720 (+) True G185134
TU250739 lncRNA upstream 7359 17640961 ~ 17661813 (+) True G185136
XR_005636848.1 lncRNA upstream 14811 17636952 ~ 17654361 (+) True LOC120546270
TU250710 lncRNA upstream 115263 17553442 ~ 17553909 (+) True G185112
TU250704 lncRNA upstream 118067 17550558 ~ 17551105 (+) True G185107
TU250765 lncRNA downstream 3839 17676725 ~ 17693634 (+) False LOC120546940
TU250756 lncRNA downstream 7579 17680465 ~ 17686398 (+) False G185145
XR_005637002.1 lncRNA downstream 13810 17686696 ~ 17687464 (+) False LOC120546941
TU250762 lncRNA downstream 14056 17686942 ~ 17688280 (+) True LOC120546941
TU250773 lncRNA downstream 87790 17760676 ~ 17763736 (+) False G185155
XM_039781107.1 mRNA upstream 14811 17652502 ~ 17654361 (+) True tcf21
XM_039782079.1 mRNA upstream 46060 17615329 ~ 17623112 (+) True slc2a12
XM_039782080.1 mRNA upstream 46060 17615342 ~ 17623112 (+) False slc2a12
XM_039782082.1 mRNA upstream 47572 17615334 ~ 17621600 (+) False slc2a12
XM_039782083.1 mRNA upstream 49291 17615334 ~ 17619881 (+) False slc2a12
XM_039782210.1 mRNA downstream 1507 17674393 ~ 17677036 (+) True LOC120546940
XM_039782456.1 mRNA downstream 36913 17709799 ~ 17758414 (+) False eya4
XM_039782454.1 mRNA downstream 36913 17709799 ~ 17758414 (+) False eya4
XM_039782457.1 mRNA downstream 36913 17709799 ~ 17758414 (+) False eya4
XM_039782460.1 mRNA downstream 36913 17709799 ~ 17753028 (+) False eya4
TU250558 other upstream 303195 17341837 ~ 17365977 (+) False map7b
TU250559 other upstream 303195 17341837 ~ 17365977 (+) False map7b
TU250543 other upstream 373471 17293654 ~ 17295701 (+) True G184996
TU250355 other upstream 835858 16825694 ~ 16833314 (+) True G184859
XR_005636928.1 other upstream 892571 16765545 ~ 16776601 (+) False si:ch211-57i17.1
TU250755 other downstream 9672 17682558 ~ 17686398 (+) True G185145
TU250889 other downstream 243967 17916853 ~ 17917248 (+) True G185237
XR_005637008.1 other downstream 348077 18020963 ~ 18054926 (+) True fndc4a
XR_005637007.1 other downstream 348077 18020963 ~ 18052071 (+) False fndc4a
unassigned_transcript_1081 other downstream 1259430 18932316 ~ 18932387 (+) True trnae-cuc_27

Expression Profile