RNA id: TU251521


Basic Information

Item Value
RNA id TU251521
length 962
RNA type TUCP
GC content 0.45
exon number 6
gene id acp1
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19633500 ~ 19648156 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTTCAGAACAACATGGCGGCCACTGGTACGAAGTCGGTTTTGTTCGTTTGCTTGGGGAATATTTGCAGATCCCCCATCGCTGAAGCAGTCTTTAGGAAGATGGCAACAGATGCTGGTGTTGTTGATAAGTGGAGGATAGACAGTGCTGCCACCTCCACCTATGAGATAGGAAACCCTCCAGACCACCGTGGTCAAGCCTGCATGAAGGGACATGGCGTGCCCATGAAGCACGTGGCCAGGCAGGTACGACCCCCCACTTATACATCTCTCTTAGCAGTAGCTAGCGCCCCCTTTTTGTTCTCTGTTGTTGCAGTGGGTCATAGACAGTGGTGCCACATCTGACTGGAATATAGACAGCTCACCGGATGCCCGTGGTCTGGCCTGCCTAAGGAAGCATGGCATTGAGACGAGCCACAGGGCCCGACAGGTAACCAAGGATGATTTCATGAGCTTTGACTACATTCTCTGCATGGATGAGAACAATTTAAGTGAGTTGAACAGGAAAGCCAAACTTGTGAAAAACCACCATTCAAAGATTGAGCTTCTTGGTTCATATGACCCACAGAAGCAGCTCATCATCGAAGACCCGTATTATGGGTGTGACAAAgactttgaaaaggtgtacgaaCAGTGTGTACGTTGCTGCAAAGCATTCCTGGAGATGAACTCTTAACAACATCTGATGTTAAACAATCTTTGCTGAAATGTTTGGATTACCATGAAAAATGTACCAAAAATGCTTTGAGTGTTTCACACTAGCACTCCTCACTATAACCCTCTTGTTGATGTCACTAGAAGAAAGTCACTAGACCAGGAAACATTTGTTTCAGTGTGGTAAATGTTCTACAAACCACACATTGTGTACATTTAGAAAGATGCTGCGTGGACAAGTTTGTAGACTGTAAATCCAAGTGattaataaaatagataaatGAGTATGACTGTCAGAGACttatttttac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251496 lncRNA upstream 13500 19572600 ~ 19620783 (+) False zgc:193593
TU251494 lncRNA upstream 57384 19572600 ~ 19576899 (+) True zgc:193593
TU251505 lncRNA upstream 80048 19553274 ~ 19554235 (+) True G185696
TU251470 lncRNA upstream 206820 19354616 ~ 19427463 (+) False acbd3
TU251479 lncRNA upstream 260350 19368053 ~ 19373933 (+) False si:dkey-206f10.1
TU251523 lncRNA downstream 4081 19652237 ~ 19652575 (+) True G185711
TU251528 lncRNA downstream 43980 19692136 ~ 19693056 (+) True G185716
TU251630 lncRNA downstream 60175 19708331 ~ 19708930 (+) True G185793
TU251631 lncRNA downstream 61058 19709214 ~ 19709512 (+) True G185794
TU251632 lncRNA downstream 63371 19711527 ~ 19711832 (+) True G185795
XM_039781955.1 mRNA upstream 36176 19584702 ~ 19598107 (+) False si:ch211-225h24.2
XM_039781954.1 mRNA upstream 36176 19584704 ~ 19598107 (+) True si:ch211-225h24.2
XM_039782811.1 mRNA upstream 59827 19572573 ~ 19574456 (+) False zgc:193593
XM_039781569.1 mRNA upstream 92451 19429596 ~ 19541832 (+) False nhsl1b
XM_039781568.1 mRNA upstream 92451 19429597 ~ 19541832 (+) False nhsl1b
XM_039781342.1 mRNA downstream 51566 19699722 ~ 19703391 (+) True LOC120546417
XM_039781214.1 mRNA downstream 64508 19712664 ~ 19731224 (+) True si:dkey-119f1.1
XM_039781219.1 mRNA downstream 97021 19745177 ~ 19830843 (+) True fig4a
XM_039781220.1 mRNA downstream 97021 19745177 ~ 19801977 (+) False fig4a
XM_039781136.1 mRNA downstream 186329 19834485 ~ 19837398 (+) True LOC120546286
XR_005636888.1 other upstream 94975 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 95075 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 95075 19429596 ~ 19539208 (+) False nhsl1b
TU251420 other upstream 426187 19204154 ~ 19208096 (+) False LOC120546624
unassigned_transcript_1081 other upstream 701896 18932316 ~ 18932387 (+) True trnae-cuc_27
TU251678 other downstream 208579 19856735 ~ 19860205 (+) False kif25
TU252459 other downstream 2296587 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2337623 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3930222 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3930222 23578378 ~ 23588514 (+) False nfkbie

Expression Profile