RNA id: TU251673


Basic Information

Item Value
RNA id TU251673
length 507
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G185827
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19850174 ~ 19851711 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTAGCTGTCATCCTCCTCCCCTCTGAGAAGCACAGGAGCAGAGTTGTTGTTAACCGATGTTAATCGGATTATATGACCTGAGAGGACACGACTTGATCAATTGAGAAGGAAAGGGACGATACTATTCATTCCCTTCTCTACCAACTAGCttcttttagaaaaaaaaatgcctctctTTATAAACCGGGACCAAATATTTGCGCACCAGGTACACCTGCTGGAGCACAAACTGAGAcgaaaagaggaggcgtgttccggcgcaaacgttacgtggtgctattttgcagtttcagaaaacaattccgccaccgaccaggaaaaacctagtctaaagtcagtggcgctagtctaaagtcagtggcgcgttattcagatgctattttagggacgaatgcttagccataatgtagcgtgtgcacaacgcgcatacacttctctcatctacagcagtttacattttttaattacaaagaaaaatattactgaaaatgcgcttcatgtgtttgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251641 lncRNA upstream 110884 19739040 ~ 19739290 (+) True G185804
TU251639 lncRNA upstream 111910 19737994 ~ 19738264 (+) True G185802
TU251637 lncRNA upstream 114118 19735840 ~ 19736056 (+) True G185800
TU251636 lncRNA upstream 114450 19735518 ~ 19735724 (+) True G185799
TU251632 lncRNA upstream 138342 19711527 ~ 19711832 (+) True G185795
TU251724 lncRNA downstream 93382 19945093 ~ 19980090 (+) True G185869
XR_005636880.1 lncRNA downstream 98900 19950611 ~ 19973343 (+) True LOC120546509
XR_005636841.1 lncRNA downstream 410074 20261785 ~ 20359609 (+) False LOC120546242
XR_005636840.1 lncRNA downstream 410074 20261785 ~ 20288756 (+) False LOC120546242
XR_005636839.1 lncRNA downstream 410074 20261785 ~ 20286864 (+) True LOC120546242
XM_039781136.1 mRNA upstream 12776 19834485 ~ 19837398 (+) True LOC120546286
XM_039781219.1 mRNA upstream 19331 19745177 ~ 19830843 (+) True fig4a
XM_039781220.1 mRNA upstream 48197 19745177 ~ 19801977 (+) False fig4a
XM_039781214.1 mRNA upstream 118950 19712664 ~ 19731224 (+) True si:dkey-119f1.1
XM_039781342.1 mRNA upstream 146783 19699722 ~ 19703391 (+) True LOC120546417
XM_039782594.1 mRNA downstream 932 19852643 ~ 19860217 (+) True kif25
XM_039781451.1 mRNA downstream 67762 19919473 ~ 19944031 (+) True cdc40
XM_039781448.1 mRNA downstream 126153 19977864 ~ 19992886 (+) False slc22a16
XM_039781447.1 mRNA downstream 126153 19977864 ~ 19992886 (+) True slc22a16
XM_039781449.1 mRNA downstream 130690 19982401 ~ 19992886 (+) False slc22a16
TU251521 other upstream 202018 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 310866 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 310966 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 310966 19429596 ~ 19539208 (+) False nhsl1b
TU251420 other upstream 642078 19204154 ~ 19208096 (+) False LOC120546624
TU251678 other downstream 5024 19856735 ~ 19860205 (+) False kif25
TU252459 other downstream 2093032 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2134068 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3726667 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3726667 23578378 ~ 23588514 (+) False nfkbie

Expression Profile