RNA id: TU251678


Basic Information

Item Value
RNA id TU251678
length 2385
RNA type TUCP
GC content 0.46
exon number 3
gene id kif25
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 19852643 ~ 19860217 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTTGTgtgtctgttcctgtgtgtgtgacccAGGTTGATCTCTGAGAAGCCTGCAGGGAGCTACACGGTGGAGGTATCAGTGATGGAGGTGTACAACAACGAGGTGCTTGACCTTCTGGCCAGAGATGAGCAGGGAAACGCTGCCGACCAGCGTCGGGACGTCATGACCACCTCCTCTGGTGCCAGCCAGGTCATCTCTCTCACGTACGAGCCTGTGCGTAACGCCTCTGAGGTGATGCAGATCATCAGCAGCGTTTTAAAGCTCAGGGCTCACTGTCCCACCCTCGTCCACACCGACTCCTCACGCTCACACCTCATTGTCACCCTCACCATTTCTTCCAAGAGCCCCAATGCACTGGCCCTGGGTGAgacgcattcacacacacactaacacgtCAACATTAACATCAAACGGTCTTGCATGGTGACTTTATGACTCTTTCATTCAGCCCGCAAGCTACAGAGTGCCAAGAAGGACATGCAGGGCTCCACCCAGAAGGAGTGGTGGAGTCCACGCTGTCGCCGTGCCAACCCTGCTAACCGCCACTCATCTGATGATCATCTCTTTGCAAGCACAGCCACCTCTCCCTGCCGCTCCCCTTCCCATTCTCCATGTCCCTCCCCCAGGCCCAGCATCTCTCAGGCTCCGTTCAGGACCAAGCTGCAGCTGGTGGACCTGGCAGGGAGCGAGTGTGTCGGTGAGAGGGTGTCATGGGAACATTGGTCCCTGAATATTTTAGGATGCACCTGGCAGAATTTTAAGTGGAAAATATACCCATCTTAACATGCAAAATTGCAAAAAGGGGCTTTAGGCTAATGCCTAATTAAGATGCTGTAGATAAACTGCTGCTAAAAATTAAAATCAAATGTCAAGTGGGTACATGTTTTTGCTCTGATGAGTTAATTTCTCAAGAGAAAAACTGACAGACTACAGCACGAGGGTTCCATTTTAAGTAAGCTCACAGCAGTTTTCCCCTCCTCAAATGCAGCTCGTTTCTGTTTCCTTTAAGTGTCTGAATCATGAAATGACAAATGATTCATTTACAGTTCACAGTACAAATAAAGCTGACGACGCAGGTCTTTGTAATTACCTTTTTCCGTTTACTGAACCCAGTACAACAGATGCCTGTTCACTGAGCAGATCAATTAGCTTCAGGACATATACATATTtggtttgtatgtatgtgtgtaccaGGGATGTCTGGAGTTTCGGGAGCAGCTCTGTGGGAGGTGTCCTGTATAAACCGCAGTCTCTCTGCTCTGTCTGATGTCCTGGGAGCTCTGGCCGAGCAGAGACCACACGTCCCCTACAGGAACAGCAAACTCACTCATCTGCTACAGGATGCCATAGGCGGCGATGCCAAGCTGCTGGTGATGCTGTGTGTCTCTCCTACGCTGCGCTTCATCACCGAGTCTCTGCAGTCTCTGGGCTTTGGCACGCGGGCCCGTCAGGTCCAAAAGGAGCTACCGAGAAGGAAGAATAACACCCTCAAAGTTAAGTGACCAGACAGAGGAAAAAGGTTTCATCCTTTGCAGATGCTGTGGCAacataggtcctgtatcagtcatGCCAACAGAACAGATTTGAGGGTACAAGATCCATACctgcacatttgttatttttgtttgataGAGTTTGTGGGCCCTTCTTAATCTCATTAGTTACTTCAACTAGGAGATTGGTTTTTCCAGaatgtttatgtatttatgtttttacataGATCTTGATAGCATGTATTATAGGGCGGTCTGAAGCCGCAAATGCCTCTATGATGCTTGAATTTAGAATGCGTTATTAGGTGAGGGATTGTGTAGAGTGAGCTAGTGGGGGGTGCAGGACCTCGACACGAAGCGGAAGTGTCTTGAATCAGATCTACATGATCTTTTACTTATTACACGGCTACTCATACAGAGTTTACCCGCTGATGACGCCTGCGTCCCGGTCGGGGTGTTTAACTTTACCGCCAGGTCGTGTAATGTGTTAATAACCCTGCCAATTACCAAGGGTGCTATAGTAGTTATGAATGGCAATGACGTTACACAGATGTTGATGATAACTCAATTTAGTATACAATCACTGTGTTTTCGACTTGCTGTAGATCATGTCAATAGTTAACAGTCCTGTATATGCAAAGGCTTTCTGACTGAAGTAGTCTTACATGTATTCTTCTGTAAATACATTTCAGTACTTGCATGTcatgccttttcttttttagtgtTTTGGGTGCAGTTatgtttatacagtatttatacatGTTTATGTATTCTGTATCTGTAACCATCACCATTTTTTGGTTACACCTTACAAGTCTGTCAAACCCCTTGATAGAATAGACTCAGTAGAAAATTGTGTCAATATTACCTTAAAATAAACAGCTGATATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251673 lncRNA upstream 5024 19850174 ~ 19851711 (+) True G185827
TU251641 lncRNA upstream 117445 19739040 ~ 19739290 (+) True G185804
TU251639 lncRNA upstream 118471 19737994 ~ 19738264 (+) True G185802
TU251637 lncRNA upstream 120679 19735840 ~ 19736056 (+) True G185800
TU251636 lncRNA upstream 121011 19735518 ~ 19735724 (+) True G185799
TU251724 lncRNA downstream 84888 19945093 ~ 19980090 (+) True G185869
XR_005636880.1 lncRNA downstream 90406 19950611 ~ 19973343 (+) True LOC120546509
XR_005636841.1 lncRNA downstream 401580 20261785 ~ 20359609 (+) False LOC120546242
XR_005636840.1 lncRNA downstream 401580 20261785 ~ 20288756 (+) False LOC120546242
XR_005636839.1 lncRNA downstream 401580 20261785 ~ 20286864 (+) True LOC120546242
XM_039781136.1 mRNA upstream 19337 19834485 ~ 19837398 (+) True LOC120546286
XM_039781219.1 mRNA upstream 25892 19745177 ~ 19830843 (+) True fig4a
XM_039781220.1 mRNA upstream 54758 19745177 ~ 19801977 (+) False fig4a
XM_039781214.1 mRNA upstream 125511 19712664 ~ 19731224 (+) True si:dkey-119f1.1
XM_039781342.1 mRNA upstream 153344 19699722 ~ 19703391 (+) True LOC120546417
XM_039781451.1 mRNA downstream 59268 19919473 ~ 19944031 (+) True cdc40
XM_039781448.1 mRNA downstream 117659 19977864 ~ 19992886 (+) False slc22a16
XM_039781447.1 mRNA downstream 117659 19977864 ~ 19992886 (+) True slc22a16
XM_039781449.1 mRNA downstream 122196 19982401 ~ 19992886 (+) False slc22a16
XM_039781446.1 mRNA downstream 123069 19983274 ~ 19992886 (+) False slc22a16
TU251521 other upstream 208579 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 317427 19429595 ~ 19539308 (+) False nhsl1b
XR_005636889.1 other upstream 317527 19429595 ~ 19539208 (+) False nhsl1b
XR_005636890.1 other upstream 317527 19429596 ~ 19539208 (+) False nhsl1b
TU251420 other upstream 648639 19204154 ~ 19208096 (+) False LOC120546624
TU252459 other downstream 2084538 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 2125574 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 3718173 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 3718173 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 4219398 24079603 ~ 24083104 (+) True G186975

Expression Profile