RNA id: XR_005636823.1


Basic Information

Item Value
RNA id XR_005636823.1
length 933
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id LOC120546175
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21151444 ~ 21153184 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTACGCACAGAAAACTCAACCAGGTGCTCCCAACACAATGAGACTTAGCAAACTTGTTTGCTTGATAGGCTAGCAGACGGTAAAACCCAGAAGCTTGGGCGGGAATGCATGCCTCTGCCACCCATGCCGAAGAAAACAGGTTCAGCTCTCGTCTCTCAGGAGATGGATGCCAACCAGAACACATCAAAGAAAATGTCACGTCAAATTAGTTTCCACGTGCCCCCTGTAAATAAGCTAATATGACCATGTACTCAGAGGAGAACATATAGCATAAAGAgtgatttgtgaaaaaagaagaaaaaaaaaaacatagctgATGTCCAAGCAAATCCATTCACACCAAAGGCAGCATTTCAGACTTGTAGTTCATTTCTACTCAAGGCTACAAGAAAAAGATACCCCATGTAATTCAGTAGCCATTAACACGGtctatgtgtctctgtgatTAGGGAAAATGTTAAGGTAGTATAGTTCCCACAGACCCCCAGTCCAACCTTCTGTGAGGATGACCACGGCATAAGACTTGTTTTATCTGAAATGCCACAAGACATCAACAATAAAGCAACTGTTGTTAAAGGGACTGCTTGGTGTAATTAGATAATGTGGACACACCCCCAACAGCAGGACCCAGGCAGAAGAGTATTTTTGGAACAAACCACACTTGGGACAAAGCTGCCATTTTTACAGCTCATGTCATTTACTGCCTTGTAGTGTTAAATGAGCGTCCTGAATGTATCTAAAGCAGTGGACTCCCTTATGGCTACATATTCTCTATAGTTATACCTTGTAATTAGTTTGCAAAGATATCTGGAAATGCAAACAATTATTGTGTATATAAAAGTGTATATAAAATATGTTGCAGCTTCCCAAAACAGGGATGATTGTAATGTATCCTTATACATAAATAATGGAAacactttccaccactgcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252027 lncRNA upstream 89481 21060757 ~ 21061976 (+) True G186106
TU252015 lncRNA upstream 118275 21032641 ~ 21033182 (+) True G186094
TU252007 lncRNA upstream 127579 21019821 ~ 21023878 (+) True G186088
XR_005636824.1 lncRNA upstream 160039 20989305 ~ 20991418 (+) True LOC120546176
TU251924 lncRNA upstream 392651 20746317 ~ 20758806 (+) True G186035
TU252054 lncRNA downstream 17798 21170982 ~ 21172639 (+) False gtf2h5
TU252055 lncRNA downstream 17798 21170982 ~ 21172639 (+) False gtf2h5
TU252056 lncRNA downstream 17798 21170982 ~ 21172639 (+) False gtf2h5
TU252057 lncRNA downstream 17798 21170982 ~ 21172639 (+) True gtf2h5
TU252169 lncRNA downstream 194760 21347944 ~ 21348581 (+) True G186210
XM_039780941.1 mRNA upstream 139221 20999574 ~ 21012236 (+) True esr1
XM_039780944.1 mRNA upstream 154832 20992466 ~ 20996625 (+) True armt1
XM_039780932.1 mRNA upstream 171294 20937518 ~ 20980163 (+) True akap12b
XM_039780933.1 mRNA upstream 171294 20968343 ~ 20980163 (+) False akap12b
XM_039782176.1 mRNA upstream 222696 20905503 ~ 20928761 (+) False mthfd1l
XM_039780945.1 mRNA downstream 6772 21159956 ~ 21162886 (+) True myct1a
XM_039780935.1 mRNA downstream 10034 21163218 ~ 21170361 (+) False serac1
XM_039780938.1 mRNA downstream 10034 21163218 ~ 21170361 (+) False serac1
XM_039780937.1 mRNA downstream 10034 21163218 ~ 21170361 (+) False serac1
XM_039780939.1 mRNA downstream 10034 21163218 ~ 21170361 (+) False serac1
TU251678 other upstream 1291252 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1503301 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1612149 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 791559 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 832595 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2425194 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2425194 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2926419 24079603 ~ 24083104 (+) True G186975

Expression Profile