RNA id: TU252056


Basic Information

Item Value
RNA id TU252056
length 1088
lncRNA type sense_over
GC content 0.41
exon number 3
gene id gtf2h5
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21170948 ~ 21172639 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TACGtcacccatggatgtattaagagaacgtcaCCCCACCTCAATGCTTTGAAACTGTTTAGGAAACAGCCGCAGCAAGCTATCAATTTGGTTTTGAGCATTTCCATTTGATTGACTGCTGATTTCTCTGCACCTGTCAACATGGTCAACGTACACAAAGGTGTTCTTGTTGAATGTGATCCTGCCATGAAACAGTTCCTCCTCTACTTGGATGAAAAAATGGCCCTGGGAAAGAAGTTCATCCTCAAGGACCTTGACGACACACACCTCTTCATCCTGGCAGAGGTGGTTCAGACCCTCCAGGAGAGAGTTGGCGAGTTAATGGACCAGAACTCATTCACCGTCACGCAGAAATGATACTCAACTGTTTCAAAGAAGTCTTGCTTCTTGGACTTAGGGCAGTTTAAGAGTTTGTCTTTAGATGAACACGGTTTGCAATGTTTTGACAATATAAATCATCAGAAACATGGATCTAACTTACAGCCAAACAAAGTTGCAGCATAAAAAGACCGAGAACAAATATCGGAAACTTTTGCAAATGTTAAACATGCAACTGAGACATCCGAACTGAGTTCTCTGTGGGAGAatataatgtgtttgtttttttacggtCTGGCGACAAACTAGGCTACACAACAACCACTAAAGAGCTTCAGTAGCCTCTAGTGTAGAACAGAGCTGACCGCATGATTCAACCCTATACTGAACATTTGAGCCAGAACGGACTTTCCTAATGTTATCTCGTACTACACAATGCATTCACTCGCAGATTTTTTTCAGCAAATTGTCCACCTTCAGATTAGTTCAAGACATGGTTCatcagaaaaataaagtgaactGTCTGATTCTTCACTGACTTAGCTTACAGTTTACGTCCATGGCTGTCCTATTAACAACAGCCGTGGTGACTGTGATTTCACATTTACAGCAGTATGATTCACTGAATCTGAATTAACTTTAAATATGTCTGAGGGTtacagtgttttccctaggtttgtgaAATATTTAGGTGCATGTATTTGGTGGGGGGTTAaggggtcctccctcaagaaaatgttatgtttttcaataaagaaaatgcaatttca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636823.1 lncRNA upstream 17798 21151457 ~ 21153184 (+) False LOC120546175
TU252046 lncRNA upstream 17807 21151444 ~ 21153175 (+) True LOC120546175
TU252044 lncRNA upstream 17807 21151461 ~ 21153175 (+) False LOC120546175
TU252027 lncRNA upstream 109006 21060757 ~ 21061976 (+) True G186106
TU252015 lncRNA upstream 137800 21032641 ~ 21033182 (+) True G186094
TU252169 lncRNA downstream 175305 21347944 ~ 21348581 (+) True G186210
TU252179 lncRNA downstream 301913 21474552 ~ 21475304 (+) True G186220
TU252261 lncRNA downstream 367949 21540588 ~ 21542781 (+) True G186297
XR_005636932.1 lncRNA downstream 572942 21745581 ~ 21746554 (+) True LOC120546760
XR_005637027.1 lncRNA downstream 660309 21832948 ~ 21833782 (+) True LOC120547080
XM_039780938.1 mRNA upstream 621 21163218 ~ 21170361 (+) False serac1
XM_039782588.1 mRNA downstream 4837 21177476 ~ 21178916 (+) True dynlt1b
XM_039780900.1 mRNA downstream 51912 21224551 ~ 21226805 (+) True mrps10
XM_039781535.1 mRNA downstream 75024 21247663 ~ 21251189 (+) False ppil6
XM_039781534.1 mRNA downstream 75275 21247914 ~ 21251189 (+) True ppil6
XM_039781537.1 mRNA downstream 79341 21251980 ~ 21266573 (+) False cd164
TU251678 other upstream 1310777 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 1522826 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 1631674 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 772104 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 813140 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 2405739 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 2405739 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2906964 24079603 ~ 24083104 (+) True G186975

Expression Profile