RNA id: XM_039780897.1


Basic Information

Item Value
RNA id XM_039780897.1
length 1101
RNA type mRNA
GC content 0.38
exon number 4
gene id erh
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21944743 ~ 21947000 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTACAACCGGAAAAAACGTATTTCATTTCCTCTGAAATCTTTTccaacagctagctaacgctataTCGCACAGGGAATTAAGAAGCAATAAACAACGACTTTTTGCAGTTTTGCATCCTCCGTAAATAGACAGGGTCTACAGTCAGCACAAAAATGTCTCACACAATTTTGCTTGTCCAACCAACCAAGAGACCAGAGGGCCGCACATATGCTGACTATGAGTCAGTGAATGAATGTATGGAAGGTGTTTGCAAAATGTATGAAGAGCATCTCAAGAGGATGAATCCAAACAGTCCCTCCATCACTTATGACATTAGTCAGTTGTTTGACTTTATTGACGACTTGGCAGATCTGAGCTGTCTTGTGTACAGAGCTGACACTCAAACATACCAACCATACAACAAAGACTGGATCAAGGAAAAGATATATGTCCTGCTGCGGCGTCAGGCTCAGCAGGCAGCAAAGTAAAAGCATCAGTGAGGAGTTGTCCTGCTAAACACACTTGGAAGGAGTTTATGCTGCACTATATTTCTTGAAGATCTGTGTATAAGGACAACATTGTCAGACTGACAAGGGAAGGGTTTACATATACTATACATTGGGAAAGGAAGGGGCTGTCACACTGGGGAAACATCAGAAATGTGGgcctttttatataaaaaatggaGTCATGCTCGGCAGCATATGTATATCTGTAATTTGTTATACTAAGTTCAGAGTGCTGCAAGGACTAACTTATTGATGGAGAGGGATCTgggttttgagaaaaaaaattttgGTCAAAATTTTAGTAGTGTGTTTTTGGTTTCCCTAAAAGTTCTGACACTTTTTATATTCATGTACTGGGCAGTTGGATTTGAACATGCTGTGTATTTCGAATGCAGGTGATTTTGTTTGACATACATGTCTGCAGACTGACTAATCCATTAATGTAACTGATCCCAGAACATTTATTTTCCATATTTCATCTATTATTGTTACTTTATCCTACCATCATGATgtaaaatgctgtttttgttaACATTTTGTGTAGCATCTGATTTCAACTATCCCTGTTTCTGTTTTCTCTGATATGAACAAAATAAACTATTGTTTTCTGAA

Function

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process
GO:0007049 cell cycle biological_process
GO:0006213 pyrimidine nucleoside metabolic process biological_process
GO:0030496 midbody cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637027.1 lncRNA upstream 110966 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 198194 21745581 ~ 21746554 (+) True LOC120546760
TU252261 lncRNA upstream 401967 21540588 ~ 21542781 (+) True G186297
TU252179 lncRNA upstream 469444 21474552 ~ 21475304 (+) True G186220
TU252169 lncRNA upstream 596167 21347944 ~ 21348581 (+) True G186210
TU252574 lncRNA downstream 347464 22294442 ~ 22294697 (+) True G186452
TU252572 lncRNA downstream 353806 22300784 ~ 22301483 (+) False lin28b
TU252644 lncRNA downstream 588681 22535659 ~ 22537716 (+) True G186506
TU252735 lncRNA downstream 769992 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 852757 22799735 ~ 22800058 (+) True G186622
XM_039782589.1 mRNA upstream 666 21938478 ~ 21944082 (+) True paplnb
XM_039782590.1 mRNA upstream 666 21938478 ~ 21944082 (+) False paplnb
XM_039782591.1 mRNA upstream 666 21939012 ~ 21944082 (+) False paplnb
XM_039782481.1 mRNA upstream 101192 21834478 ~ 21843556 (+) False LOC120547078
XM_039782480.1 mRNA upstream 101192 21839943 ~ 21843556 (+) True LOC120547078
XM_039781906.1 mRNA downstream 321 21947299 ~ 21959643 (+) False smek1
XM_039781905.1 mRNA downstream 322 21947300 ~ 21961671 (+) True smek1
XM_039781904.1 mRNA downstream 323 21947301 ~ 21961671 (+) False smek1
XM_039782234.1 mRNA downstream 185863 22132841 ~ 22211477 (+) True LOC120546953
XM_039782242.1 mRNA downstream 234507 22181485 ~ 22211477 (+) False LOC120546953
TU251678 other upstream 2084543 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2296592 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 2405440 19429595 ~ 19539308 (+) False nhsl1b
TU252499 other downstream 38801 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 1631400 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1631400 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2132625 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 2559935 24506913 ~ 24507813 (+) True G187094

Expression Profile