RNA id: TU252843


Basic Information

Item Value
RNA id TU252843
length 337
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G186641
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22846872 ~ 22847674 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAGCACTGGGGGATCATCACTCCCCATCCATTAGCAGTTAGCTGGCTAACTCTGGCTAACGTCAGCTATGGTCCATCACCATTATTATCTCATttctaaaataaacaaatgtttgGAATGACCCGGCTAGCTAACAACAGACTGGGAACATGTATATTGGGGACTGTTTGGATTCTAACTGGGATCGCAATGGTGCAACGAAGCGAGTGAGGGGCTTGCGTCACTGATGCCAGGTGCAGGCTGTAGCTGAGAGCACTCAGGATGAGTGGGGCTGGAGAGCACACAGACATCCTGTCAGTGGTAGACGTGGTCAGAGACAGATGGAAAGTGGTAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252810 lncRNA upstream 37411 22809220 ~ 22809461 (+) False kcns3b
TU252803 lncRNA upstream 46814 22799735 ~ 22800058 (+) True G186622
TU252735 lncRNA upstream 126979 22716970 ~ 22719893 (+) True G186578
TU252644 lncRNA upstream 309156 22535659 ~ 22537716 (+) True G186506
TU252572 lncRNA upstream 545389 22300784 ~ 22301483 (+) False lin28b
TU252914 lncRNA downstream 114377 22962051 ~ 22966010 (+) True si:ch211-22i13.2
TU252933 lncRNA downstream 169283 23016957 ~ 23018800 (+) True G186697
TU252957 lncRNA downstream 244974 23092648 ~ 23095505 (+) False dtl
TU252958 lncRNA downstream 292833 23140507 ~ 23142640 (+) False ppp2r5a
TU252962 lncRNA downstream 295756 23143430 ~ 23143648 (+) True G186725
XM_039781077.1 mRNA upstream 36352 22807879 ~ 22810520 (+) True kcns3b
XM_039782452.1 mRNA upstream 51509 22790720 ~ 22795363 (+) True zpax1
XM_039782451.1 mRNA upstream 51509 22790932 ~ 22795363 (+) False zpax1
XM_039782453.1 mRNA upstream 56317 22787092 ~ 22790555 (+) True ttc32
XM_039781344.1 mRNA upstream 65079 22775637 ~ 22781793 (+) True matn3a
XM_039781345.1 mRNA downstream 424 22848098 ~ 22856575 (+) True ttbk2b
XM_039781478.1 mRNA downstream 13134 22860808 ~ 22875214 (+) True znf106b
XM_039781479.1 mRNA downstream 13134 22860808 ~ 22875214 (+) False znf106b
XM_039782422.1 mRNA downstream 44498 22892172 ~ 22902489 (+) True nrbp1
XM_039782421.1 mRNA downstream 45189 22892863 ~ 22902489 (+) False nrbp1
TU252499 other upstream 781283 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 899872 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2986667 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3198716 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3307664 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 730704 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 730704 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1231929 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1659239 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2156345 25004019 ~ 25009407 (+) False lama2

Expression Profile