RNA id: TU252914


Basic Information

Item Value
RNA id TU252914
length 2106
lncRNA type sense_over
GC content 0.40
exon number 7
gene id si:ch211-22i13.2
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22962033 ~ 22966010 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAAAATGTCTCCTAAGAGTGCTGGCTAATGCTAATTTACGAGCGATAACTGCGAATAGATATACATTTTACCCCTTTTCCAGCTGTCAAATtgtcataataaataaatatatgataCATTAACTGTATTCTGCTTTCGAAATGGTGAGTACCGAACTTCTTCTTTAGCCAGCATTTATTATTCAATAGCTTAAAGTATTTTAGCTTTAGCTTAGTGAACGTAAACGTAGCCCTGTTAACATTAGGAAAAGAGAAAGGACAATTAAGTCAACGAAAGCGGAGTCCAGAGTGTCAAGCTCCAGCTCCCGAGCAGATGAAAGGAGGAGATCAACGAGCTCAGGTCGAGAAAAAACTAAGCGTAAACGCAGCCGTAGTAGATCTTCCTCGTCGTCCTCTTCCAGGTCATCTTCGTCATCTTCATCATCGTCGTCCTCTTCTTCATCGGGTTCATCCCACTCATCCAGCCACAGTCAGAGTAGCTCTAGCAGTAGCGACTCCCGCAGTAAATCCAGAAAGCAGTctaagaaaaggaaaaaggataaacaaccaaaaaaaCCGAAAGGGAAGAAAGAgaagcgacacaaacgtaaaaaagacaagaaagtaaaaggaggagaagaaaacgTGGGACCTGTACAAATCTCCAAGTATTTGAATGACAAGAAAAAGGGCAAGTACAGCATGATTTCAGGGAAGAAGATAAAGATGAAagtaaaaaagtcaaagaaagaTAAACAGCGGGATAAAAACCGAGCACAACTTCTTGAGTTCTTGAACTCTACCCTGTGATGCCATTGTCGACGGCAGTGGTGGTGGTGCTCGGAAATGTCAGCAGAACTCAGGAAATAACCTTCCAGGACAACAACAATGAAGAGTTTTCTGAGAAAAAATGATGAATATGACTTGCATTGACGCACAAGGGCAGCACACGGCATGATGGAGTAAAGGAGCTGTATCTCTTGCAATGAAGAGATGCGTTCAGACCACCAGCTTCATTTTCATGGCACTGCCCAGGTGGCCAATTCTTCATCTTAGTCTGATAGCTTTTGTGATATGAGAAGTGTTTATGTTGAGCAGTGTCATCCAAAAATGTTATCTGTAATCAACTACATCAGATGAAGGCCAGTGACTGCCAGCGATCGGCTTCTCAACTTTGTTTGTGGTCACCCCTTTAAAAGTGTACTCCACCGATTGAGCATTTTACCCCTATAACATTGTCAGACTCAGAATGGACCagaaatattgtcttttttattccaCGTATTTTTCTTCCTTGTCGAAAACCAGGCgtctacattacccacaatgaaGTGTGAGTGCCGACAGTTCGGCCGGACATTCGGGTGTGTTACGGTAGTAGCGGCTAATATAGCCTCGAGCCGCTATCCTCAAACAGAGCTGAGGAGCGgactacagaggtctggtaagctcacttctttctaactcaaCACCCCCATAATTTAAAATTTTCAAACTTGTAACAAACTTGTAGTCTTCCACGTTGACTCAAAATagacatcacttgaggcaatttaACAGACTTAAGTagctccctctggagccacaaaaggctttacACTAAACTATCACTCTCAAATATTCAGTAGTCTGTTTACAGTAGTaacctgtaaacagactttgatgtgtaaaattgaTTCCCCTTTAAAGTTTGAAATATGTATCTACCTGCTGGTTCTGTCAATCATTTATGTCAACTACATGTAGGACCACccatactttttatttttttgtagatATCTAACTGTTATGTTTCCACAGTTAATGTTGGCTGTGGTAGCCACGGCATTATCAGTGTGTACTGATGTTTAATTGTTtatattaatttgtttaaaattataTGAAAATTAGCTCTGCATTTTTTGACAGTATTCTTTTCTCCAAATTCAGGTATGAATATTATACAATTTAattaaactgaaatacaaaatacaattaCTGTTCATCCCCCTGTATCAATCCAGTTTAAAGCTTTTTATGGATGATGGCGTAAACCTGTTGTGTACTGCTGAATTTTGATGTGtgacaaacaaagaaaagaaacggCAATAAACTGCTGGAAAGACTTTACTTCACTCAAAAAGGTCTG

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0097159 organic cyclic compound binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function

KEGG:

id description
ko03040 Spliceosome
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252843 lncRNA upstream 114377 22846872 ~ 22847674 (+) True G186641
TU252810 lncRNA upstream 152590 22809220 ~ 22809461 (+) False kcns3b
TU252803 lncRNA upstream 161993 22799735 ~ 22800058 (+) True G186622
TU252735 lncRNA upstream 242158 22716970 ~ 22719893 (+) True G186578
TU252644 lncRNA upstream 424335 22535659 ~ 22537716 (+) True G186506
TU252933 lncRNA downstream 50947 23016957 ~ 23018800 (+) True G186697
TU252957 lncRNA downstream 126638 23092648 ~ 23095505 (+) False dtl
TU252958 lncRNA downstream 174497 23140507 ~ 23142640 (+) False ppp2r5a
TU252962 lncRNA downstream 177420 23143430 ~ 23143648 (+) True G186725
TU252963 lncRNA downstream 177949 23143959 ~ 23144290 (+) True G186726
XM_039781441.1 mRNA upstream 2792 22945509 ~ 22959259 (+) True rhag
XM_039782422.1 mRNA upstream 59562 22892172 ~ 22902489 (+) True nrbp1
XM_039782421.1 mRNA upstream 59562 22892863 ~ 22902489 (+) False nrbp1
XM_039781478.1 mRNA upstream 86837 22860808 ~ 22875214 (+) True znf106b
XM_039781479.1 mRNA upstream 86837 22860808 ~ 22875214 (+) False znf106b
XM_039780975.1 mRNA downstream 121810 23087820 ~ 23095221 (+) True dtl
XM_039781867.1 mRNA downstream 129902 23095912 ~ 23140786 (+) True ppp2r5a
XM_039781868.1 mRNA downstream 129902 23095912 ~ 23140786 (+) False ppp2r5a
XM_039781936.1 mRNA downstream 178898 23144908 ~ 23151382 (+) True opn8c
XM_039781937.1 mRNA downstream 178898 23144908 ~ 23151382 (+) False opn8c
TU252499 other upstream 896462 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1015051 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3101846 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3313895 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3422843 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 612368 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 612368 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1113593 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1540903 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2038009 25004019 ~ 25009407 (+) False lama2

Expression Profile