RNA id: TU252957


Basic Information

Item Value
RNA id TU252957
length 1463
lncRNA type sense_over
GC content 0.44
exon number 2
gene id dtl
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23087820 ~ 23095505 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACCCCAGCTTGCTGCCTGTGCTCCCAGTGGAGCCGCCCTGCCTCTGCCCTCCAGCACCACCTCACCCATCCCTTCTCAGGGTGCtaaggctgctgctgctcgccAGAGAACACCATCTTCTATCAAACAGTGGTTATCGCCGAGCCGTGGCTCTCCTGGTCAGGTCAGCCCTTCACTCCGTAGGGTACTGAGCCCGTGTCCCCAGAGCCCGGTGAGCAGTGCCTCTCCCACAGAGCGACGGGCCAAACGCAGGCTGGAGACTGGTGACAGTCCATCTGCAGGCTGTGGGGGTGCAGAACAATGTGACTGTGTTACTGAACTCTACCCTGCGGCCAAGAGAAGCCGGGCCCTGTCTGGAATCTGCTGCCCCGCTCAAGAGAGCCAGCTACAAACAGACTGTCACACAGAGGACAACAAGCAAGTCTCATCAAGACAGACTGGCAAAGAGAATTGCTCTCCCAGGGCAAAGGACTGGCTGTCAGCGATGGGCCAAAAGATGAGGAAAGGTCAAGGAAGCCCTAGTACTGCTAGAAGCCCCAGTGCCTCTAAAAAACAAGATGGCAAGACACCAGCTTCACCGacaatccGCTCACCACAAACCACGAAGAAAATCTCCATGTATTTTACAAGAAGGCCTAATCTGGAGTGAGAGCTTGAGCCAGTCAGATGCTCTGTGCTTCTGTTTTAAAATGCtagatttttattttgagtttgttttttaaccagAACCCACAGGCAATAATACATTGCATAGAGATTGACAAAACAGTCATTCTGAATATTTGACGCTGCAGTTTTCATATCTCGAGaggctgatttatttattttaattgggCCATGGGTTTTGCAGTTGCCTCCTACACAATTTTCTGGTGCTGTGAAGAATCtctggttgaaaaaaaacaagttgcATGTTGCTAagtatatcttttattttactcaaacCTGGCAACTTCAAGAGATGCAAGAACCCAGACTTAATACATTTGTTTAGGAGGTCCACCAGGTATTAATCCTCAAGTGCAGAGAATAAATGTTTGTCTGAGGTGTGGACATTTTAAATTCACTAAAAAATACCATTTATGTGATCCTTATCTTTGAGCATTTTTATGAACTTCACTAAGCTGTATTGCTTTATCTCCTTTTGGGGTTTTTTATGTATGGGTTTGACCCTTTTCTTTGTGttacatatatacatttctgcaaaatgttttttttttttgagcaaaTGCTTATGTTTATATGTAAAAAGTTGCTTGGTTAATTTGTATTTAATTGACACAAATTTGCTCTGGTCCGATTTTATTAAATTGAAAAGAGTGTTAAAAGTGTGTGGCATGCTATCTGTTGCATATTATCAGTGTGATAAAGAGTGTTTGGAGGTCAGACACAAGTGATAGTGATGCCATGACTTTAATCATTTACTGCAGTGGTTACAAAGTTTATCTTCTTGTGACCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252933 lncRNA upstream 73848 23016957 ~ 23018800 (+) True G186697
TU252914 lncRNA upstream 126638 22962051 ~ 22966010 (+) True si:ch211-22i13.2
TU252843 lncRNA upstream 244974 22846872 ~ 22847674 (+) True G186641
TU252810 lncRNA upstream 283187 22809220 ~ 22809461 (+) False kcns3b
TU252803 lncRNA upstream 292590 22799735 ~ 22800058 (+) True G186622
TU252958 lncRNA downstream 45002 23140507 ~ 23142640 (+) False ppp2r5a
TU252962 lncRNA downstream 47925 23143430 ~ 23143648 (+) True G186725
TU252963 lncRNA downstream 48454 23143959 ~ 23144290 (+) True G186726
TU252966 lncRNA downstream 101211 23196716 ~ 23196995 (+) False rsph3
TU252986 lncRNA downstream 173293 23268798 ~ 23275460 (+) True G186747
XM_039781445.1 mRNA upstream 126652 22962033 ~ 22965996 (+) False si:ch211-22i13.2
XM_039781441.1 mRNA upstream 133389 22945509 ~ 22959259 (+) True rhag
XM_039782422.1 mRNA upstream 190159 22892172 ~ 22902489 (+) True nrbp1
XM_039782421.1 mRNA upstream 190159 22892863 ~ 22902489 (+) False nrbp1
XM_039781479.1 mRNA upstream 217434 22860808 ~ 22875214 (+) False znf106b
XM_039781867.1 mRNA downstream 407 23095912 ~ 23140786 (+) True ppp2r5a
XM_039781868.1 mRNA downstream 407 23095912 ~ 23140786 (+) False ppp2r5a
XM_039781936.1 mRNA downstream 49403 23144908 ~ 23151382 (+) True opn8c
XM_039781937.1 mRNA downstream 49403 23144908 ~ 23151382 (+) False opn8c
XM_039781933.1 mRNA downstream 64522 23160027 ~ 23186726 (+) True tagapb
TU252499 other upstream 1027059 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1145648 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3232443 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3444492 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3553440 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 482873 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 482873 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 984098 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1411408 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1908514 25004019 ~ 25009407 (+) False lama2

Expression Profile