RNA id: TU253107


Basic Information

Item Value
RNA id TU253107
length 1281
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G186841
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23438240 ~ 23439520 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agattattattttttggggcattttaggccttttatcTTTAtaagacagctgaagacatgaaaggggagaggtcGGAATCTAACCCTGGCCCgttgcgtcgaggagtaaacctctatatatgggcgcccactctaccaactgagccatccCGGCACCCGACTCTGGGAAAATGTTTAATTGGCGTTTTACACTAATTTCTGACAAACGAAGGTGATTGATTGAAAAAATAGTTAGTCAGATTAATCAACATTGGCAGTAATCattagtttcagccctaaaaAGCAACCATATCAAACCAATACAAGATATTTTTGTGGGATACAGAAATCCTGACACCGGTTAAAACAAAGGTCCGACAAATAGTTTTCACTCTATAGAGTCTTTTAGAACGAATGGTAATTAGTAGAACTACAGTGAGTGGGGAATATATTTGCAAGGAGATTTAGGAATTTCCAGCAGCGTACTTACACCGCAAGTAGTGATATGGCTTTCACATCTTACAAGTGAAATATTATATGGCAGTAGCCAAGCCAAAGAAAAGGTCCTCCTCCAGGGTCCAAATAATTATAAGAGTGCCATAACAGATCAAACATTATTTCCTTGACCTTGTCTCCAGCTTGAGGAACGGCTCAGACTTTTTGGCTGAAAGCTCAGGCAGCAAAAAATCTCTCTGTCTGCAGGAGCTCTCGCTACACGGACCTGACGTTTACACAGGATTAGAGATTCATTCAGCATTAAGTAAATGACCCTCTGCCGGCCAGGAGCAACACTTCTGGTTGTTTGGATTCTGTGGTACAGAATTCACACAGGGATTAGTTTAAATAAATCAGCTGTTTTGGCAAAGTCAGAATAGTGCAAGCCAAAAGAATCCTTGCATATATGCATTAGTCTGAAGtacctgaaaaaatgactttttcCAATGACACATTCTTTGGAGTGTCAGCTATGTCCATGCACTTGCTTTTCATCCACATTTAGGATATTGCATATTTCAGAAAACAATGTGTTTTTCAGCTGCACAGATGCACTGTGGTCTGCACACCACATCTGAGAAAACACTGCTTGTTGACTCACACCATCATAATCTTATTGAATCTAAGGACGTTAAAGAAAGTCGATGAAACTCAACATGATGATGTGAGGTTATATTTTCAGAGCATGATGCAACACTTTTCTTTAAAGGGGTAACAATGTCCCTtttcaagttaaaaaaaattaaatgaatattaaacaactgaattttttaaataaaaataaaaagccacaggtcttgttttttg

Function

GO: NA

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03030 DNA replication
ko03460 Fanconi anemia pathway
ko04110 Cell cycle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253109 lncRNA upstream 2889 23435136 ~ 23435351 (+) True G186843
TU253108 lncRNA upstream 5857 23420899 ~ 23432383 (+) True G186842
TU252986 lncRNA upstream 162780 23268798 ~ 23275460 (+) True G186747
TU252966 lncRNA upstream 241245 23196716 ~ 23196995 (+) False rsph3
TU252963 lncRNA upstream 293950 23143959 ~ 23144290 (+) True G186726
XR_005636851.1 lncRNA downstream 36179 23475699 ~ 23506564 (+) True LOC120546283
TU253175 lncRNA downstream 122756 23562276 ~ 23564295 (+) False tcte1
TU253166 lncRNA downstream 163116 23602636 ~ 23607535 (+) True G186882
TU253189 lncRNA downstream 208059 23647579 ~ 23649568 (+) True G186901
TU253190 lncRNA downstream 210876 23650396 ~ 23658430 (+) True G186902
XM_039782913.1 mRNA upstream 42904 23391206 ~ 23395336 (+) True hlx1
XM_039782914.1 mRNA upstream 42904 23391207 ~ 23395336 (+) False hlx1
XM_039782697.1 mRNA upstream 57026 23371884 ~ 23381214 (+) True slc35f6
XM_039782616.1 mRNA upstream 89884 23307723 ~ 23348356 (+) True kcnk3a
XM_039781401.1 mRNA upstream 184791 23246999 ~ 23253449 (+) True LOC120546473
XM_039781132.1 mRNA downstream 83367 23522887 ~ 23539844 (+) False mia3
XM_039781133.1 mRNA downstream 83368 23522888 ~ 23539844 (+) False mia3
XM_039781128.1 mRNA downstream 83371 23522891 ~ 23539844 (+) True mia3
XM_039781131.1 mRNA downstream 83371 23522891 ~ 23539844 (+) False mia3
XM_039781129.1 mRNA downstream 83371 23522891 ~ 23539844 (+) False mia3
TU252499 other upstream 1372651 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1491240 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3578035 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3790084 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3899032 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 138858 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 138858 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 640083 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1067393 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1564499 25004019 ~ 25009407 (+) False lama2

Expression Profile