RNA id: TU253108


Basic Information

Item Value
RNA id TU253108
length 529
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G186842
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23420899 ~ 23432383 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTTGATTGGCTGGGCTTGGAGTGAGCGCAGAGATAGGTAGCTATAGGCCtaataaccatagacagtataataACAGGTGTGTGAGGGACTGCCCATAAAACATAACAACCTGTGTGCTGACTGAGGAAAAAAATGTTGTGGAGGACTGGTCACGCTGAGATTAacttgagtatttttacagaCTGTTTTGGTGTTACTATCAGTTTCCTAGCTATGCTAGCAGTAGCAACAGCGCTAACGCTAAACTAGCGCCTTTTAGCCGACTTTTGACGGGACATGGTAAGCTAGTGCGTTCCCGTGGATTCAATAGACGAAAACAGGAGACAGTCGCACCTATGGCAACATGGACCATGACGTCTCTCCGCCGTTAAGGAGGAGCTGTTTCCCAGCAACCAGCCGTTTCCAGCCTCAAGGGACTGTGAGaaacgtagctagctagctaactgctGGTGGTGCTTTTTTCCCCATCTTAACTCACGTTGTCTTCCTGATGGCAGATGCATTGGAGCTCACCCTTGCGTGTAgttg

Function

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component

KEGG:

id description
ko03430 Mismatch repair
ko03440 Homologous recombination
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252986 lncRNA upstream 145439 23268798 ~ 23275460 (+) True G186747
TU252966 lncRNA upstream 223904 23196716 ~ 23196995 (+) False rsph3
TU252963 lncRNA upstream 276609 23143959 ~ 23144290 (+) True G186726
TU252962 lncRNA upstream 277251 23143430 ~ 23143648 (+) True G186725
TU252958 lncRNA upstream 278259 23140507 ~ 23142640 (+) False ppp2r5a
TU253109 lncRNA downstream 2753 23435136 ~ 23435351 (+) True G186843
TU253107 lncRNA downstream 5857 23438240 ~ 23439520 (+) True G186841
XR_005636851.1 lncRNA downstream 43316 23475699 ~ 23506564 (+) True LOC120546283
TU253175 lncRNA downstream 129893 23562276 ~ 23564295 (+) False tcte1
TU253166 lncRNA downstream 170253 23602636 ~ 23607535 (+) True G186882
XM_039782913.1 mRNA upstream 25563 23391206 ~ 23395336 (+) True hlx1
XM_039782914.1 mRNA upstream 25563 23391207 ~ 23395336 (+) False hlx1
XM_039782697.1 mRNA upstream 39685 23371884 ~ 23381214 (+) True slc35f6
XM_039782616.1 mRNA upstream 72543 23307723 ~ 23348356 (+) True kcnk3a
XM_039781401.1 mRNA upstream 167450 23246999 ~ 23253449 (+) True LOC120546473
XM_039781132.1 mRNA downstream 90504 23522887 ~ 23539844 (+) False mia3
XM_039781133.1 mRNA downstream 90505 23522888 ~ 23539844 (+) False mia3
XM_039781128.1 mRNA downstream 90508 23522891 ~ 23539844 (+) True mia3
XM_039781131.1 mRNA downstream 90508 23522891 ~ 23539844 (+) False mia3
XM_039781129.1 mRNA downstream 90508 23522891 ~ 23539844 (+) False mia3
TU252499 other upstream 1355310 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1473899 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3560694 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3772743 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3881691 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 145995 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 145995 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 647220 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1074530 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1571636 25004019 ~ 25009407 (+) False lama2

Expression Profile