RNA id: TU253109


Basic Information

Item Value
RNA id TU253109
length 216
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G186843
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23435136 ~ 23435351 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgttttcaaggtgtagttcagggaaatatgatccgccgtgagcacggtgtattttattttgaaaattaacgggatatttattttgtttctgtgctcgacttcctgtcccgcactatctgccgtgtgctgaattgctgcggagctctccgtcgtccgtcaaaaatagaagctctgcgtatctgctgcggactgacggaactgggacggagtcggg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253108 lncRNA upstream 2753 23420899 ~ 23432383 (+) True G186842
TU252986 lncRNA upstream 159676 23268798 ~ 23275460 (+) True G186747
TU252966 lncRNA upstream 238141 23196716 ~ 23196995 (+) False rsph3
TU252963 lncRNA upstream 290846 23143959 ~ 23144290 (+) True G186726
TU252962 lncRNA upstream 291488 23143430 ~ 23143648 (+) True G186725
TU253107 lncRNA downstream 2889 23438240 ~ 23439520 (+) True G186841
XR_005636851.1 lncRNA downstream 40348 23475699 ~ 23506564 (+) True LOC120546283
TU253175 lncRNA downstream 126925 23562276 ~ 23564295 (+) False tcte1
TU253166 lncRNA downstream 167285 23602636 ~ 23607535 (+) True G186882
TU253189 lncRNA downstream 212228 23647579 ~ 23649568 (+) True G186901
XM_039782913.1 mRNA upstream 39800 23391206 ~ 23395336 (+) True hlx1
XM_039782914.1 mRNA upstream 39800 23391207 ~ 23395336 (+) False hlx1
XM_039782697.1 mRNA upstream 53922 23371884 ~ 23381214 (+) True slc35f6
XM_039782616.1 mRNA upstream 86780 23307723 ~ 23348356 (+) True kcnk3a
XM_039781401.1 mRNA upstream 181687 23246999 ~ 23253449 (+) True LOC120546473
XM_039781132.1 mRNA downstream 87536 23522887 ~ 23539844 (+) False mia3
XM_039781133.1 mRNA downstream 87537 23522888 ~ 23539844 (+) False mia3
XM_039781128.1 mRNA downstream 87540 23522891 ~ 23539844 (+) True mia3
XM_039781131.1 mRNA downstream 87540 23522891 ~ 23539844 (+) False mia3
XM_039781129.1 mRNA downstream 87540 23522891 ~ 23539844 (+) False mia3
TU252499 other upstream 1369547 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1488136 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3574931 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3786980 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3895928 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 143027 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 143027 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 644252 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1071562 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1568668 25004019 ~ 25009407 (+) False lama2

Expression Profile