RNA id: XM_039782883.1


Basic Information

Item Value
RNA id XM_039782883.1
length 2253
RNA type mRNA
GC content 0.43
exon number 4
gene id tcte1
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23559498 ~ 23564429 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCTATCGTTTATCAAACGTTTACAACGTTTTACAAGGTTTTTCAACGATTCCCTAGATATCTGTAAAAGTTAGCGAAGTTAGTCGcagtttagctaacgttagtctcacattgccagacctacctagctagctagctatctccACATCGCTTTAGCTAACATAGCTAAGGATCGAGGAGGCTCTGCTAACGTTAATTTACTTTAACTTACTTTAGACACAGTTTTTGCTGGCAGCATAATGTGGCAGCATGTTGACGTTAGCCAATGCCCATATATTTTATAGTTAGAGTCTAGTCACAATTTATTCAGGCGCTAAATGTCATTAAACAAACTATATCAACACCAGAAAATAAGCAAGACTGACTCCATTTACAATTGCTGGGATGTCCAAATTTTAATGTGTAATTTGATGTTTCTTCTTTTAAGACAGAGGATAGTCTACAAAAACCCTGCAACAATGCGTAGGTCCCCATATTCTCCTGGAGCCAACCTCAACCCAGTTGAAGACTTCAGAAAGATGAGGAGGATTATTGCTGAAGATCCAGACTGGTCTCTGAATATAGTTCCTTGTTTATCAAAACTCTGTCTGCAAAGCATCGAGAGAAACTTTGAGGGAAAGCCAATATTTGAAGAGCTTACTCCCATCCAGAAAGACTTTGTGCAGGAGAACCTGTCTACCTCCCTGCCCCTGCATGTCACAGCCAACTTGATCAGCGATGGTGTCTATTGGAAGAGGTGCTGCGAGCAGCGGTGGGACCTTTGTGACGTCTCTCACTATGGCCACAGCTGGAAACGAATGTTCTTTGAGAGGCACATGGAGACCATTATTGAGCTTTTCATCCCAGAAGTTACAGAGACCAAGACAGTTCTAGTGATGGTACCTCTTTGTAGGAACTACGTCAAGAGGCTGGACATCTCCCAACTCCTGCCACCTATCAAGGAGCCCcagaatgaggaggaggaggaatttGGCTTAGAGTTGGCAAGTGACAATGAGTACGACAGACCATCTTTGGACCACTTTGACTTTAACATCCTCCTTGACAAGCTAACAAAACTGGAAGAGCTCCATTTAGTGTACAGGGTCAAACAATGTGGTATGAACTTCGAATGGAAGATGTTTGAGATGACCACCAGAGATTGTGAGTCCCTTGCCAAGGCCCTTAAGTCCTGTAAGACTTTGAAGCTTCTAAAGCTCCATCAAAGCCACATTGAGGATGAAAAGTGCCGGCTACTGGTGAAAGACCTTTTGGACCACCCGTCCCTGAGGGAGCTTGACTTCTCCCACAACCTGATCGGAGACAAAGGAGCCAGAGCCATCGGAAAGCTGCTCAACAGGAGTAAACTGGAGATCCTGAACTTGTGTGACAACGAAATTAGAGGCCTGGGAGCCAAAGCTATAGCTCACGCATTGTCCAAGAACTCCACCCTTTTGTCACTCAACCTGCGTCTCAACCGATTGAGAGATGACGGGGGGCAGGCTATTGGCAAAGCCTTGCTGAACAACAACACCTTGCTTCACCTGCATCTGGGAGGCAATGAGTTAACTGGGCCTACTGCAGTCACACTGTCTAAAGTTCTAGTTCAGAGTAACACCCTGAAGAGCATCAATCTCTCCTGCAACAACCTATGTGTGgatggAGGCAGAGCTCTGGAGGAGGCGATGTCTCACAACACCAGCGTAACAGAATGTGATATCCGTCTGACGGAGGTTGACAAGCAGAGCGTTTCCTTCATCAACCAGGTGGTTTGGGccaaccagagtttagaacaAAAGAGACATGCTCAAGAGAGTAAAACCAAGTAAACGTCAACAGCTTCTTTTTGAAATACAAACCCACCTTCATTATTAATTGATTCCTGCTTTCCCGTATTCATTTAGCCACAGAGCATGACCACTATATGCCAACTCTGCATCTCAAACTGAAGTAGCTGATTTTAAACAAAATTTCATTGCACCAAAAAGCACAAAATATATAGTCCTATTGATAATATGGTAGCTAATTggcaaaatgtaaatgatgtgATTTCACACCAGTATGTCTCTAGTATCTCTTCCCTTGTTGCAGCCTGTACTATAactataactttaaaaaaaacatgtaaaaactaCAAGCAAAAAAACTGTGATTAAATGTGTCAACAGCATATGTTAAGACATAGACCATATATCCAGTTTACAATACACGAAGCATCACATGCTTAACTTTTCTGGGATGTGGCAACAATTGTCATAAAGTAATTTTTGACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005636851.1 lncRNA upstream 53216 23475699 ~ 23506564 (+) True LOC120546283
TU253107 lncRNA upstream 120260 23438240 ~ 23439520 (+) True G186841
TU253109 lncRNA upstream 124429 23435136 ~ 23435351 (+) True G186843
TU253108 lncRNA upstream 127397 23420899 ~ 23432383 (+) True G186842
TU252986 lncRNA upstream 284320 23268798 ~ 23275460 (+) True G186747
TU253166 lncRNA downstream 38207 23602636 ~ 23607535 (+) True G186882
TU253189 lncRNA downstream 83150 23647579 ~ 23649568 (+) True G186901
TU253190 lncRNA downstream 85967 23650396 ~ 23658430 (+) True G186902
TU253196 lncRNA downstream 102508 23666937 ~ 23668127 (+) True G186905
TU253301 lncRNA downstream 265096 23829525 ~ 23861934 (+) True G186954
XM_039782738.1 mRNA upstream 5514 23548578 ~ 23554266 (+) True rnf8
XM_039782739.1 mRNA upstream 5598 23548578 ~ 23554182 (+) False rnf8
XM_039781133.1 mRNA upstream 19936 23522888 ~ 23539844 (+) False mia3
XM_039782077.1 mRNA downstream 13949 23578378 ~ 23588514 (+) False nfkbie
XM_039781485.1 mRNA downstream 25539 23589968 ~ 23597399 (+) True slc35b2
XM_039781487.1 mRNA downstream 46580 23611009 ~ 23624138 (+) True rbm25b
XM_039781488.1 mRNA downstream 46580 23611009 ~ 23624138 (+) False rbm25b
XM_039781493.1 mRNA downstream 76446 23640875 ~ 23644644 (+) True atp6v1d
TU252499 other upstream 1494191 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1612780 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3699575 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3911624 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 4020572 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 13949 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 13949 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 515174 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 942484 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1439590 25004019 ~ 25009407 (+) False lama2

Expression Profile