RNA id: TU253189


Basic Information

Item Value
RNA id TU253189
length 351
lncRNA type inter_gene
GC content 0.53
exon number 4
gene id G186901
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23647579 ~ 23649568 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGGCGTTTACGATTAGCAGGCTGGTGGTAAAGCGACATCTCCTCATAGGTCAGGATGTCGTCGTAGTCAGCAGTTCTGCTCAAGGTAGACGTgatcttcttcctcttttttatgtttttctttgcaTACCAAAGCTTCCCTTGGTGCTCTCGACTCCTGTCTGTTATAGTTTTCTTCAAGGTCTCTCTCTGTTGCTGGAAGCTTTTCcCTGGAATGAGTCCAGCCAGAGGCTGGTTGTCCTCATCTCCGTCCCTGTAGGCCTGCCACCAGCTGGGGTCGTCCTGGCTGATGACGTGGAGGATGTCCCCCTTCTGGAAGGATAGGCCCAGCTCCCGACACGGCAGGAAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253166 lncRNA upstream 40044 23602636 ~ 23607535 (+) True G186882
TU253175 lncRNA upstream 83284 23562276 ~ 23564295 (+) False tcte1
XR_005636851.1 lncRNA upstream 141015 23475699 ~ 23506564 (+) True LOC120546283
TU253107 lncRNA upstream 208059 23438240 ~ 23439520 (+) True G186841
TU253109 lncRNA upstream 212228 23435136 ~ 23435351 (+) True G186843
TU253190 lncRNA downstream 828 23650396 ~ 23658430 (+) True G186902
TU253196 lncRNA downstream 17369 23666937 ~ 23668127 (+) True G186905
TU253301 lncRNA downstream 179957 23829525 ~ 23861934 (+) True G186954
TU253309 lncRNA downstream 218712 23868280 ~ 23925648 (+) True G186961
TU253322 lncRNA downstream 423195 24072763 ~ 24147218 (+) True G186972
XM_039781493.1 mRNA upstream 2935 23640875 ~ 23644644 (+) True atp6v1d
XM_039781487.1 mRNA upstream 23441 23611009 ~ 23624138 (+) True rbm25b
XM_039781488.1 mRNA upstream 23441 23611009 ~ 23624138 (+) False rbm25b
XM_039781485.1 mRNA upstream 50180 23589968 ~ 23597399 (+) True slc35b2
XM_039782077.1 mRNA upstream 59065 23578378 ~ 23588514 (+) False nfkbie
XM_039781674.1 mRNA downstream 380485 24030053 ~ 24068592 (+) True tmem121ab
XM_039782471.1 mRNA downstream 495429 24144997 ~ 24146762 (+) True LOC120547070
XM_039781257.1 mRNA downstream 505919 24155487 ~ 24186456 (+) True extl3
XM_039781258.1 mRNA downstream 513634 24163202 ~ 24186456 (+) False extl3
XM_039781259.1 mRNA downstream 557758 24207326 ~ 24215960 (+) True nt5c1bb
XR_005636956.1 other upstream 57890 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 59065 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 1581990 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1700579 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3787374 19856735 ~ 19860205 (+) False kif25
TU253325 other downstream 430035 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 857345 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1354451 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 1570300 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 2378492 26028060 ~ 26030400 (+) False nudt14

Expression Profile