RNA id: TU253301


Basic Information

Item Value
RNA id TU253301
length 1192
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G186954
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 23829525 ~ 23861934 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCAAGTTTATTCGATCTGTGGTTATCAAAGACAATGCCCAAGAACATaagttatgaaaaaaaaagccttcATGATGGGGACTCTGAGTTTGATATGACatagcattattattattattatttttttttaaacataggcatatttttcctcatttattttaaaacagcaatgttaaaagtaaaaaataaaaaataaacaaacaaacagatggACAGAAGAGACAGCAGAGATGCCGAAAAGGACATTATCTCAGTGGAGTGCTTCTTTTGGTGAGCCTCGGGACGgctcctgtgtctgtgtgtgtgcgtgcaccaTGAGTTCACCATACTCCACATAATCTTACCATTGTTCACTAGAGGTCACCAGCAGAGTGACTGGAGTTCACCATTGTTCTAAGTGCTGGAGGGGCTGAGGACAGTCCCTGCTGTCACTGCCAGTCTCCTGCTGGCCACACAAACACTATTCAGTCAGGAGGAAAGCCaggaataaaaacacacacactgctcaccATTAATCAGGCCGTGACATGGCCCCTTAGACTTAAacagcacacacaggcacacctGATCACGCACGCATCCATccacgcacgcaaacacactgTACAGTATACAATCCACAAGCCCCATACGCACAAAATTAAGACCGTTTAAAAACACTCAATAAAAGCACAATATggtattttaaaattaattgcACATGTAAAGACGAGATGGAGGAAGCACAGTGAGGGAAGCAGGAGGagtgtgggggaggggggcagcGGTGAGCATGGCAAGAAGAGGATACAGTACATTCAGTAAAcaaaacaggagaaaaagaaataaaaggcaAGATTAGAATCAAAACCACTGgaaagaattaaataaaaatcaaaacactttttttcccccccagttTGTCATCTTTTTTTCCAGTCATTGATTCGAAGCTCACTCTGGGGGTGTGCGAGTCTTACAGTAGTCCCAGTGTTGTCTTGGGAGAGCGAGCTCGGTCAGTTGTGTAGATTTGAATTGTTTTCTCGCTTTATTTAAAATCAATGTTCACGTCTACATCTCTACAGACCCGACGCCAGAGCATCGGGCAGGGGGGAGGAGTGGTAGGGCGCAAGTCTTCCATGACCTGACATATGCACAGGCATTTacacaagtgcacacacacacacgtccgcgcacacacacacacacacacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253196 lncRNA upstream 161398 23666937 ~ 23668127 (+) True G186905
TU253190 lncRNA upstream 171095 23650396 ~ 23658430 (+) True G186902
TU253189 lncRNA upstream 179957 23647579 ~ 23649568 (+) True G186901
TU253166 lncRNA upstream 221990 23602636 ~ 23607535 (+) True G186882
TU253175 lncRNA upstream 265230 23562276 ~ 23564295 (+) False tcte1
TU253309 lncRNA downstream 6346 23868280 ~ 23925648 (+) True G186961
TU253322 lncRNA downstream 210829 24072763 ~ 24147218 (+) True G186972
TU253342 lncRNA downstream 283086 24145020 ~ 24146747 (+) False LOC120547070
TU253347 lncRNA downstream 323355 24185289 ~ 24187864 (+) False extl3
TU253387 lncRNA downstream 349479 24211413 ~ 24234751 (+) True G187027
XM_039781493.1 mRNA upstream 184881 23640875 ~ 23644644 (+) True atp6v1d
XM_039781487.1 mRNA upstream 205387 23611009 ~ 23624138 (+) True rbm25b
XM_039781488.1 mRNA upstream 205387 23611009 ~ 23624138 (+) False rbm25b
XM_039781485.1 mRNA upstream 232126 23589968 ~ 23597399 (+) True slc35b2
XM_039782077.1 mRNA upstream 241011 23578378 ~ 23588514 (+) False nfkbie
XM_039781674.1 mRNA downstream 168119 24030053 ~ 24068592 (+) True tmem121ab
XM_039782471.1 mRNA downstream 283063 24144997 ~ 24146762 (+) True LOC120547070
XM_039781257.1 mRNA downstream 293553 24155487 ~ 24186456 (+) True extl3
XM_039781258.1 mRNA downstream 301268 24163202 ~ 24186456 (+) False extl3
XM_039781259.1 mRNA downstream 345392 24207326 ~ 24215960 (+) True nt5c1bb
XR_005636956.1 other upstream 239836 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 241011 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 1763936 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 1882525 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3969320 19856735 ~ 19860205 (+) False kif25
TU253325 other downstream 217669 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 644979 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 1142085 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 1357934 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 2166126 26028060 ~ 26030400 (+) False nudt14

Expression Profile