RNA id: TU253325


Basic Information

Item Value
RNA id TU253325
length 3466
RNA type TUCP
GC content 0.44
exon number 2
gene id G186975
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24079603 ~ 24083104 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAAGAACTTATGAGACAAATGTACAGGAATTAtttgccattttattttttttcttcacattatTGCTTTACAGTAAAATGCATTGATTGGATATGTCCAGTAGGCCTATAGCAAGACAATACATTCATATAAGTTATACAGATGTCCTCAGTTATGTTTTATAATTACTatacattaaatatttttttaatcaattattaTTCTTGACAAACAACTCCCACGTCACATTGAGCTCACAGTGCATCAGGTCGCATTCAATCAAGAAATACATACCGGTCCTCTCTTGTGTTCATTTGCCATTTCTAACGGGTTTGTTCTAAAGTGTGTGCGCTTATTTTGTACACAGGATTTCCATACAATCTGGATTTCTGCAGAGATACGACATGTATGGCATTGGAATTCTActcatttttttcctctttaaaaaaagtgacttggTAACAAAGATGCGAGTTAGACAGCCGGTGAGAACGTACGCTGTGTGGCAAGATGAGGACAAAAAAGAGGAGCAGTTTTTTTCCCCGCCTGTGGGTGTTACCAATCAAAGCTGGCAACCGGGACATGACCACACAGAGCAACaactaaaatatgaaaaaaaaaaaaaaacctaacacTGCACATTCTGAATCaactcaagtacagtacagaTGTGCCTTCCCcacaaaaagcatcaaaaaagtAGGTCCTGTATGTTCAGAAGACCCACTGAAAGGGttgagggggagagagggtggTGTACAAGCAGTTAGTAGGTGTGTGGATACGTCTGTAGGCCCTGTGTGGTCACCTCTGTCCAGTAAACAAACCCATTTGAACCCTGATAGAGTAGCAGCTTAAGGAtgtccaactttttttttttttaattccttaaAGTCTGCTCTCATCTAGGTTATTTAAAAAGTGACAACGTCCCAGGACGGCGGAGGAAAACTATCCATCCATGCAGTCCCTGCTGCCCCTCTGCTCCTTCTGCTTGGGTTGGTGGAGAGTTAATGCCCTTGTGCAAGAGGGAACTCGAGtgcagaaagaggaaaaacgGGAGGAGAGAGTTCCCTCAAAGCCACTGTTCCAGAAACCATCCATCCTTTGGGCTCAGTTTATTAgctgtcacaaacacacacacctgtgagcTCACACATCAAATACTAGACAAACCGACGTCACATCTCCACGGGATCCCCCGTCTTTATATGGCAACCTTGCAGGGGCCTTCTGTCACAAAGAATTCTTCAAATTGAGATTGCATATACAAGTGCCTGCTGCCAACTGTCTGGCAGAGGAATATTTTTAACACTCCGCACACGCTTTTTAGTCTCTGCACCTCACTTACGGACTCCTCACAGGCATTTTTGCatgatgtcaaaatgtctggATTGCAGTGGTGCTCGTAGCTGCCGATTTTTGTAAAGTGGGTCGGGCGGTGTCCATGGAGATGCCCAGAAGCCCTCAGCCTttttgctgtgctgtggaggagCTGCGTTTAatgtcccagcatgcactgcagACAGAGGCGGATGTGCTCATGGTGTTAAGAGTTTCCAGTCTGTCGAGAGTTGAAAGCCCAGTGTGGGAAACGTAGCGTGGGCCcatactgaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagagaaaatacACACGCATAGAAGGAAGCACTAGTTGATTTAGAATGAGAGGACGGCCATTAAAGTGCAATATCTACATGTAACTCAAAATCAAGAGACCACCACCATCTCCTGGAGTTGTCCATCTCCGAGTTTCCCTGATGTGGTTGGCAACCCCGCCCTGGGTAGAGGGGCTGCGGTACCCCCTACTGGCCAGAGGGTGTTATAGCAGACAGTCAGTGTTGTGAACCGTCtggttgcatttgttttaaaacGACCtccatgctgctgctgtctcaAGATGACAACAAGTCACCCGACGATGACAAAAATCCAATGCATCCCACAGATCGGGAGACAGGTTTTTTTCTGAAGTTGTGCAGAGGGAAAAGTGGACTGACCCATCGCTGAATGAACATaatgctgggggggggggggagtctgCCAGCACCAGCCAGATACCTCTCTGAGTGGTCAAATCTCCTTACAGCACAAAGCAAGAAAAGCATTTCCATGTGCAATTTGTTTCAGTGAAAAACAGGCAATGTCCTATATTTGCAACAAGTTCTCCTCCTTATTTCATACTAGACAAAACCTtggtttgaaaaaataaatacaaaaacaaaagtgtttacAAGTTTACATTGTGCAGTGTTGCATATGCGTAACACCCTCAGAGTCATCTGATCTGGACGGTGATACATCTTGACACAAAGTGTCCCGACAAaacgtcttcttttttttttttttgaaaacaaaGCAGATTTGATCAAGCAGATGAGGGTTGAGAATTGTTGCGTAGGGTGACTGAAGTGAAGCGCTAACAGTATCTGCTCCCTGATGCCAAAGGCCATGCCAGGGGAGACGGTCCAGACTGGAGGAGGGGAGCTGCCAAGGACAAGGCCCTCCTCCATGGGGTCGAGAGGAAAAAAggagtgcatttttttttatctttgggTGCTGGGGTAACTGTAATTCTTTTAGGAATAAGTTCAAGGGAAggtgttttcttcttctttacagACACTGGTTTGGTTTGTGGAAAGGCTTTGGAAATGATGTGTGGAAATCTACAGTGTGAAAACAGTGAAAATACACACCAACTATCAACAGGGGCACTTATGATTTTGGAGATCCCCGACATCTAAAAGGCATGCTAGATGGGTAGAAAGTTAACAGGCGCACAGAGGAACTAAAGACTTTACTGCAATAACAGGCAATGCCCGAAATAATGGGAATTAAGGACCGGCACTGTGTGACAAGAGGACAAATTAGAGACATAGAATGGAGCCCACTCTTAGTGCGTGTACTGCCTCTTGAGGAAATGATACTCATATTTGGGACTAAAAGGATTACAAGAAAGagcagaaggaaaaaaaaaaaaaaaaaaaaaaaaaaaaaagagtctgcagATAGGTCCAGTattattgaaaaagaaaaaaaaaagatacgaTTTTGGGGTTGCTATTGGAGCGTTGAGGTTTTGGTATCCGAGCCATGCTGCTGTGCTTTACTCCTCCATGCACATGGGCAGGTTGACGAAGGTGAATACGTTGTATTCAATCATGACGGAAAAGCAGAGGAAGATGGCGTACAACACCAGGACGTACACGCCCAGCTTCACATCCAGCCTCCATTTATTCAGGTGGATCCCCAGcacctgcgcacacacacacacacacacacacacacacacacacacacacacacacacacaacacacacacacacacacacacacacacacacacacacacacacacacacacacacac

Function

GO:

id name namespace
GO:0005102 signaling receptor binding molecular_function
GO:0005179 hormone activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253309 lncRNA upstream 153955 23868280 ~ 23925648 (+) True G186961
TU253301 lncRNA upstream 217669 23829525 ~ 23861934 (+) True G186954
TU253196 lncRNA upstream 411476 23666937 ~ 23668127 (+) True G186905
TU253190 lncRNA upstream 421173 23650396 ~ 23658430 (+) True G186902
TU253189 lncRNA upstream 430035 23647579 ~ 23649568 (+) True G186901
TU253342 lncRNA downstream 61916 24145020 ~ 24146747 (+) False LOC120547070
TU253347 lncRNA downstream 102185 24185289 ~ 24187864 (+) False extl3
TU253387 lncRNA downstream 128309 24211413 ~ 24234751 (+) True G187027
TU253454 lncRNA downstream 303852 24386956 ~ 24387168 (+) True G187074
TU253548 lncRNA downstream 553621 24636725 ~ 24639484 (+) True G187158
XM_039781674.1 mRNA upstream 11011 24030053 ~ 24068592 (+) True tmem121ab
XM_039781493.1 mRNA upstream 434959 23640875 ~ 23644644 (+) True atp6v1d
XM_039781487.1 mRNA upstream 455465 23611009 ~ 23624138 (+) True rbm25b
XM_039781488.1 mRNA upstream 455465 23611009 ~ 23624138 (+) False rbm25b
XM_039781485.1 mRNA upstream 482204 23589968 ~ 23597399 (+) True slc35b2
XM_039782471.1 mRNA downstream 61893 24144997 ~ 24146762 (+) True LOC120547070
XM_039781257.1 mRNA downstream 72383 24155487 ~ 24186456 (+) True extl3
XM_039781258.1 mRNA downstream 80098 24163202 ~ 24186456 (+) False extl3
XM_039781259.1 mRNA downstream 124222 24207326 ~ 24215960 (+) True nt5c1bb
XM_039781858.1 mRNA downstream 141953 24225057 ~ 24252680 (+) True si:dkey-174m14.3
XR_005636956.1 other upstream 489914 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 491089 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2014014 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 2132603 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 4219398 19856735 ~ 19860205 (+) False kif25
TU253479 other downstream 423809 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 920915 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 1136764 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1944956 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 2193591 26276695 ~ 26281368 (+) False gareml

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU392140 True 1427 lncRNA 0.38 2 NC_048568.1 34972792 ~ 34974299 (-)