RNA id: TU253342


Basic Information

Item Value
RNA id TU253342
length 396
lncRNA type sense_over
GC content 0.46
exon number 3
gene id LOC120547070
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24144997 ~ 24146762 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTAGAGTCCAATGTCCTCTGCCTGGTGAGTGAAGAGCTGAAGGCCACGGTTAGGTGTAAACAAAAGGAACCATGGTCAACTTTGTAGCACTTGCCCGTGAGCATTGGGTGAACATCTTGGTGCCCATGGGCTTTGTGATTGGATGGTACCTTGACAAACAGCAGGACCAGAAGCTGACAGCTTTCAGGAACAAAAGTGTTTTGTTCAGCAGGGAGCTGAAGTCTGGTGAGGAGGTGACCTGGAAGTAGACTACCCCTACCTGGAATGTGTCCTGTCATCTGTGGTGTGAATGACCCTCAAATCAGAATATTTAAGAGTCCTGTGACTGTTTGAGTTGGATCTCCTAATAATCTTTCATATTTTGAGTTGTATCAACCGATAATAAACATGCCCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253309 lncRNA upstream 219372 23868280 ~ 23925648 (+) True G186961
TU253301 lncRNA upstream 283086 23829525 ~ 23861934 (+) True G186954
TU253196 lncRNA upstream 476893 23666937 ~ 23668127 (+) True G186905
TU253190 lncRNA upstream 486590 23650396 ~ 23658430 (+) True G186902
TU253189 lncRNA upstream 495452 23647579 ~ 23649568 (+) True G186901
TU253347 lncRNA downstream 38542 24185289 ~ 24187864 (+) False extl3
TU253387 lncRNA downstream 64666 24211413 ~ 24234751 (+) True G187027
TU253454 lncRNA downstream 240209 24386956 ~ 24387168 (+) True G187074
TU253548 lncRNA downstream 489978 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 509223 24655970 ~ 24656643 (+) True G187165
XM_039781674.1 mRNA upstream 76428 24030053 ~ 24068592 (+) True tmem121ab
XM_039781493.1 mRNA upstream 500376 23640875 ~ 23644644 (+) True atp6v1d
XM_039781487.1 mRNA upstream 520882 23611009 ~ 23624138 (+) True rbm25b
XM_039781488.1 mRNA upstream 520882 23611009 ~ 23624138 (+) False rbm25b
XM_039781485.1 mRNA upstream 547621 23589968 ~ 23597399 (+) True slc35b2
XM_039781257.1 mRNA downstream 8740 24155487 ~ 24186456 (+) True extl3
XM_039781258.1 mRNA downstream 16455 24163202 ~ 24186456 (+) False extl3
XM_039781259.1 mRNA downstream 60579 24207326 ~ 24215960 (+) True nt5c1bb
XM_039781858.1 mRNA downstream 78310 24225057 ~ 24252680 (+) True si:dkey-174m14.3
XM_039781860.1 mRNA downstream 112801 24259548 ~ 24278489 (+) True LOC120546721
TU253325 other upstream 61916 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 555331 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 556506 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2079431 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 2198020 21944743 ~ 21947000 (+) True erh
TU253479 other downstream 360166 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 857272 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 1073121 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1881313 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 2129948 26276695 ~ 26281368 (+) False gareml

Expression Profile