RNA id: TU253347


Basic Information

Item Value
RNA id TU253347
length 2576
lncRNA type sense_over
GC content 0.40
exon number 1
gene id extl3
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24155487 ~ 24187864 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCAGAATCTCTGCCTGTGGAAGATCAAACACAGACTCGTTAGTCTGACATAGAGACAGGACCTCGGCTGAAGAGTTTAACAGGTTGGCCCAATCATGTTTAGTAGTGTTACGTGTTCAAGAAGGAATTTACTTCAGCGGTCACCATAATGCCTCAAATTTGTCATGAAAACCATCCACCATTTTGTTATGCTTACAGGATCTGCACTCTTTGATGAGTGTTTAAAATGGCCTGTTTTTTATGCTATAGGGTGTTTACTAATGTTTGTAAAATTGGTCCGAGGTTGAAGTAGTCatgtttaaatgtaataatattaaCCAATCAATGGTTACAATGTCCCTTACAGAAGTGCAACAAACTCAATAATCACAGCTgccaaaatcaacaaaaaaatttTAGATGTCTAATTAAGGTTGTAATTATAAAGAAGATTAAATGTACTATTAggattggtaaaaaaaaaatgtttagagGGAATATcttgacattttaggaaatacaaTTATTTGCTTTCAGGCggggagttagatgagaagatgtaCATCTAGTGCTGGGTATCGGTACTCGATGACTATAATAACCCAGTACCAAGTGGTATGGAAACTTCTCCAAACGATACctgcatttgatttttttttttactcagatATAGAAATAAATTTACTTTGTAGGGTTTTGTTGGCAAGCGTACTTTGATTTAATGCAACAGGCCCACTACCGTCTGTGGTGTGGTGAAGTCAAGCGCGGCGTATTTGACAACTTGTTCAGCTTGCCGAGATGCCataaaaatgttcaaatgtgcatctgataaaaaataaaagcataaaatgcAGAAGTATTATTTCAAATGAAGTACTCTATTGTTATCGGTAACTGACGCACGCTTCTAAGCCCTACCTTTACCTCTCTCTCCAATCTGTCTGGTTAGACTGaaaaaaacagctagcctggctctgtccaaatgtACGAAAATCTGCCTGTCGGCACCTCTGAAGCTCAATAATTaacatcttgtttgtttaatccgaacaaaaaacaatgtgtaAAAATGAAAAGCCTTTCCCTGTTTCCGGTCTtcgtgctaagctaagctaactggctgcagGCTGTAACGTTTAGCCTTATATCTAATAGATATTAGATATAAGGCTAGCTATCTAAAGATAAATAGATATTCTTATCTAACTCTCCACCAGAGGGCAAATAAGCATGTTTGCCAACATTTCAActattctcttttatatattgCCAGCTCTGACTGTGCGACAGAAGTATTAGATATGTCCCGCCATGTTCACGACAGCCCCCTGTATAGAACTTCCCCAGCTCAGACAGAAAGGTCACTTTACAGTGTCGCCATATTGgtttcactttgtttttttaccattgCTTGATGAATGTTTTCCTTGCCAAATAGGTACGATGTCTGCTGCTTTACAGCATCATTTGCAGGGTGCACAGTGGGAGTGGTTGCTAAAGGGATGCAGATTGGCACACCCATATCCACTCTGCATGGtactttattagttatttaGGAGTTGATCATTCGAGCCCTTCCCATCATGTATTATGAATCCAAAGTCCTTTATTTGACCAGACCTAATTCCTGTAATTTGAACAAAAGATTGGCCTAAAAAGGTGTGACCTAGAAAAACTGTGAGGATGCttttatgaaacaaaaactCTCGTAAGTCCATGGTTCCTGTATATTTATTgaatatattattaaaaaagattttttaaacTGATAATGACACATTCAATAAAATGACATTCAATAAAATGACAAGACATTGTAGTTTATTATTCCTTATAGCAAAGAGGTCCCAACCTGATAGAGCCGTCAGCTTATTTCATTGCCAAGGAAAACTAGCTCGTGCCACTGAATGCTTGACTGACCTGAGAGCAGCACTCAGGCAGATGACCTGGTTCTTAGGAAGCTCCACCTGTAACAGAATGTCACAAACTGAGCTTCTGCAACAGTCGGTGGACACGCAGTAAAGTCTTGTCTTTGAAGACAAATCTCTACCTGCTCCAGGtggctgcttctgctgctgttgctgctctCAGGCCCCTCCAgtgaaatataataatatttgttCAGCATGTTTAGCTAAAAGGGACAAATGAAGAGCCAAATTCCTAATTGCACAGGTGTAAAATAGCAATACAGCTAAAACAAATCCAAATGTACACAGCTGCTGCACCAGACTTGGAAAAACCTAACCTCGTCGCACCTGAACACCTTTTATTGGAGCTCGGGGGCTCGTAATTACCTGGCTGATGAAACCTGTCCTGGGGCATAAATAGGATCAGCTGGTATTTTGGAAGTCAGAACCTCCCATACCTCCAGTCCCTGGTTTCCCCCCTCTAGGGTCTGTGGCACAGCTGGTTTTCCGTGGATCAGATCGGATACATTTCCCTGGAAGGCCGCAGTCACTCTGCTAGGTGGTAGGAGTTGTGAAACTATGTGCTCCTGGGTCTGATCCACCACTTTGTGAGAGGCTCCAGCCACCTGCAACGCTGCTTGCGCTGTGCcagactgatgatgatgatgatgatgatgatgatgatga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253322 lncRNA upstream 38071 24072763 ~ 24147218 (+) True G186972
TU253342 lncRNA upstream 38542 24145020 ~ 24146747 (+) False LOC120547070
TU253309 lncRNA upstream 259641 23868280 ~ 23925648 (+) True G186961
TU253301 lncRNA upstream 323355 23829525 ~ 23861934 (+) True G186954
TU253196 lncRNA upstream 517162 23666937 ~ 23668127 (+) True G186905
TU253387 lncRNA downstream 23549 24211413 ~ 24234751 (+) True G187027
TU253454 lncRNA downstream 199092 24386956 ~ 24387168 (+) True G187074
TU253548 lncRNA downstream 448861 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 468106 24655970 ~ 24656643 (+) True G187165
XR_005636936.1 lncRNA downstream 821649 25009513 ~ 25012350 (+) True LOC120546772
XM_039782471.1 mRNA upstream 38527 24144997 ~ 24146762 (+) True LOC120547070
XM_039781674.1 mRNA upstream 116697 24030053 ~ 24068592 (+) True tmem121ab
XM_039781493.1 mRNA upstream 540645 23640875 ~ 23644644 (+) True atp6v1d
XM_039781487.1 mRNA upstream 561151 23611009 ~ 23624138 (+) True rbm25b
XM_039781488.1 mRNA upstream 561151 23611009 ~ 23624138 (+) False rbm25b
XM_039781259.1 mRNA downstream 19462 24207326 ~ 24215960 (+) True nt5c1bb
XM_039781858.1 mRNA downstream 37193 24225057 ~ 24252680 (+) True si:dkey-174m14.3
XM_039781860.1 mRNA downstream 71684 24259548 ~ 24278489 (+) True LOC120546721
XM_039781349.1 mRNA downstream 91556 24279420 ~ 24376144 (+) True rngtt
XM_039782880.1 mRNA downstream 220207 24408071 ~ 24412330 (+) True cnr1
TU253325 other upstream 102185 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 595600 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 596775 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2119700 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 2238289 21944743 ~ 21947000 (+) True erh
TU253479 other downstream 319049 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 816155 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 1032004 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1840196 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 2088831 26276695 ~ 26281368 (+) False gareml

Expression Profile