RNA id: TU253387


Basic Information

Item Value
RNA id TU253387
length 230
lncRNA type read_through
GC content 0.44
exon number 2
gene id G187027
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24211413 ~ 24234751 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

caccatatttttgttgtactgcacattgcttcagcccctcttttcaccctgtgttcaggtctctgttttagctacagagtgagacatctcactgctgtaacatcttcaCACATGcatagctaggtaaggatcatatcagctagctagactagacttcttctaaatgagggcgcacttccaactttgcgtggaatacctgcagaacagggacatgtaaGTGGTTCCTTTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253347 lncRNA upstream 23549 24185289 ~ 24187864 (+) False extl3
TU253322 lncRNA upstream 64195 24072763 ~ 24147218 (+) True G186972
TU253342 lncRNA upstream 64666 24145020 ~ 24146747 (+) False LOC120547070
TU253309 lncRNA upstream 285765 23868280 ~ 23925648 (+) True G186961
TU253301 lncRNA upstream 349479 23829525 ~ 23861934 (+) True G186954
TU253454 lncRNA downstream 152205 24386956 ~ 24387168 (+) True G187074
TU253548 lncRNA downstream 401974 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 421219 24655970 ~ 24656643 (+) True G187165
XR_005636936.1 lncRNA downstream 774762 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA downstream 774779 25009530 ~ 25012241 (+) False LOC120546772
XM_039781257.1 mRNA upstream 24957 24155487 ~ 24186456 (+) True extl3
XM_039781258.1 mRNA upstream 24957 24163202 ~ 24186456 (+) False extl3
XM_039782471.1 mRNA upstream 64651 24144997 ~ 24146762 (+) True LOC120547070
XM_039781674.1 mRNA upstream 142821 24030053 ~ 24068592 (+) True tmem121ab
XM_039781493.1 mRNA upstream 566769 23640875 ~ 23644644 (+) True atp6v1d
XM_039781860.1 mRNA downstream 24797 24259548 ~ 24278489 (+) True LOC120546721
XM_039781349.1 mRNA downstream 44669 24279420 ~ 24376144 (+) True rngtt
XM_039782880.1 mRNA downstream 173320 24408071 ~ 24412330 (+) True cnr1
XM_039782881.1 mRNA downstream 173320 24408071 ~ 24412330 (+) False cnr1
XM_039782704.1 mRNA downstream 179096 24413847 ~ 24417800 (+) True akirin2
TU253325 other upstream 128309 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 621724 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 622899 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2145824 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 2264413 21944743 ~ 21947000 (+) True erh
TU253479 other downstream 272162 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 769268 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 985117 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1793309 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 2041944 26276695 ~ 26281368 (+) False gareml

Expression Profile