RNA id: TU253454


Basic Information

Item Value
RNA id TU253454
length 213
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G187074
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24386956 ~ 24387168 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtgacaaaataatgccaacatgttcctatttacatgttgtgatttgtagagtcacagcgtgtacaaaaaacaacgtaacatgagacacagccatcttctaaccgtaaacaaaccgggaactatattctcaggcggaagaatatagtacttgggcggagtgatatgctcgcagcaagcctgtctgggaatatagttcccggtttgtttgcgggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253387 lncRNA upstream 152205 24211413 ~ 24234751 (+) True G187027
TU253347 lncRNA upstream 199092 24185289 ~ 24187864 (+) False extl3
TU253322 lncRNA upstream 239738 24072763 ~ 24147218 (+) True G186972
TU253342 lncRNA upstream 240209 24145020 ~ 24146747 (+) False LOC120547070
TU253309 lncRNA upstream 461308 23868280 ~ 23925648 (+) True G186961
TU253548 lncRNA downstream 249557 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 268802 24655970 ~ 24656643 (+) True G187165
XR_005636936.1 lncRNA downstream 622345 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA downstream 622362 25009530 ~ 25012241 (+) False LOC120546772
TU253656 lncRNA downstream 723878 25111046 ~ 25115288 (+) True G187212
XM_039781349.1 mRNA upstream 10812 24279420 ~ 24376144 (+) True rngtt
XM_039781860.1 mRNA upstream 108467 24259548 ~ 24278489 (+) True LOC120546721
XM_039781858.1 mRNA upstream 134276 24225057 ~ 24252680 (+) True si:dkey-174m14.3
XM_039781259.1 mRNA upstream 170996 24207326 ~ 24215960 (+) True nt5c1bb
XM_039781257.1 mRNA upstream 200500 24155487 ~ 24186456 (+) True extl3
XM_039782880.1 mRNA downstream 20903 24408071 ~ 24412330 (+) True cnr1
XM_039782881.1 mRNA downstream 20903 24408071 ~ 24412330 (+) False cnr1
XM_039782704.1 mRNA downstream 26679 24413847 ~ 24417800 (+) True akirin2
XM_039781804.1 mRNA downstream 32092 24419260 ~ 24436323 (+) True rars2
XM_039781805.1 mRNA downstream 32439 24419607 ~ 24436323 (+) False rars2
TU253325 other upstream 303852 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 797267 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 798442 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2321367 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 2439956 21944743 ~ 21947000 (+) True erh
TU253479 other downstream 119745 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 616851 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 832700 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1640892 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1889527 26276695 ~ 26281368 (+) False gareml

Expression Profile