RNA id: TU253479


Basic Information

Item Value
RNA id TU253479
length 317
RNA type TUCP
GC content 0.51
exon number 2
gene id G187094
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24506913 ~ 24507813 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAACAGCATGCAGAATGGCTTCAGGAGCACAGGTGTCCCACTTCTTGCACCCTGGACTGGCGAAGACATAAGCAGAAGCCTTTCCTTCAACAAGCTGAATCTTGTTCCCAGCACCCCCCACTTTTATAACTTCATGAGGCTCCATGGCGTTTACACAGTCCGTTACCAGCTTGTTGCTATGGGAACGTGTGGTGGTGACGATGCGTCTGTCACCTGGAACTTCCTGCAGCTGAAATCCAAAAGCGCCCAATCCCAGCATTCCCCACATGGTTCTTCCTAAAGATGCTCCTGCTCCAAGCTGACGAGGAAAATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253454 lncRNA upstream 119745 24386956 ~ 24387168 (+) True G187074
TU253387 lncRNA upstream 272162 24211413 ~ 24234751 (+) True G187027
TU253347 lncRNA upstream 319049 24185289 ~ 24187864 (+) False extl3
TU253322 lncRNA upstream 359695 24072763 ~ 24147218 (+) True G186972
TU253342 lncRNA upstream 360166 24145020 ~ 24146747 (+) False LOC120547070
TU253548 lncRNA downstream 128912 24636725 ~ 24639484 (+) True G187158
TU253556 lncRNA downstream 148157 24655970 ~ 24656643 (+) True G187165
XR_005636936.1 lncRNA downstream 501700 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA downstream 501717 25009530 ~ 25012241 (+) False LOC120546772
TU253656 lncRNA downstream 603233 25111046 ~ 25115288 (+) True G187212
XM_039782057.1 mRNA upstream 524 24498746 ~ 24506389 (+) True LOC120546832
XM_039781350.1 mRNA upstream 21314 24446908 ~ 24485599 (+) True LOC120546425
XM_039781804.1 mRNA upstream 70590 24419260 ~ 24436323 (+) True rars2
XM_039781805.1 mRNA upstream 70590 24419607 ~ 24436323 (+) False rars2
XM_039782704.1 mRNA upstream 89113 24413847 ~ 24417800 (+) True akirin2
XM_039782343.1 mRNA downstream 7631 24515444 ~ 24518183 (+) True grcc10
XM_039782287.1 mRNA downstream 22518 24530331 ~ 24630590 (+) False LOC120546974
XM_039782288.1 mRNA downstream 22518 24530331 ~ 24630590 (+) False LOC120546974
XM_039782291.1 mRNA downstream 22518 24530331 ~ 24603824 (+) False LOC120546974
XM_039782289.1 mRNA downstream 26909 24534722 ~ 24630590 (+) True LOC120546974
TU253325 other upstream 423809 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 917224 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 918399 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2441324 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 2559913 21944743 ~ 21947000 (+) True erh
TU253601 other downstream 496206 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 712055 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1520247 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1768882 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1937837 26445650 ~ 26452304 (+) False tfap2b

Expression Profile