RNA id: TU253556


Basic Information

Item Value
RNA id TU253556
length 318
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G187165
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 24655970 ~ 24656643 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGCTATAATGTTCCCATAGCGGTTCTTGGTACGGTTCTGATCCTTCTTGGCCACGTCCCAGGAGGCCGACTGGCCCTCGAAGAAGCTCTGTATCACTTCATACTCCTCCTTAAAGCCGTAGCTGTCAGATGTTTTCATCAGGTTGATGTGCTGCAGAAGATCGGCCACTCTGATGGCAGGGTGAAGCTGTCCAGTCTGATAGGGAGATTCGGTTCCTTCACAGTGATACCGAGGAACATCCAGAAGCCTGCTGTTCTCCGCTGCAGAGCCACTGTGGTTCTCATCTACAACAAAAGAGGAAATTACTGGTTAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU253548 lncRNA upstream 16486 24636725 ~ 24639484 (+) True G187158
TU253454 lncRNA upstream 268802 24386956 ~ 24387168 (+) True G187074
TU253387 lncRNA upstream 421219 24211413 ~ 24234751 (+) True G187027
TU253347 lncRNA upstream 468106 24185289 ~ 24187864 (+) False extl3
TU253322 lncRNA upstream 508752 24072763 ~ 24147218 (+) True G186972
XR_005636936.1 lncRNA downstream 352870 25009513 ~ 25012350 (+) True LOC120546772
TU253634 lncRNA downstream 352887 25009530 ~ 25012241 (+) False LOC120546772
TU253656 lncRNA downstream 454403 25111046 ~ 25115288 (+) True G187212
TU253657 lncRNA downstream 454403 25111046 ~ 25143492 (+) False G187212
TU253684 lncRNA downstream 560510 25217153 ~ 25218783 (+) True G187235
XM_039782287.1 mRNA upstream 25380 24530331 ~ 24630590 (+) False LOC120546974
XM_039782288.1 mRNA upstream 25380 24530331 ~ 24630590 (+) False LOC120546974
XM_039782289.1 mRNA upstream 25380 24534722 ~ 24630590 (+) True LOC120546974
XM_039782291.1 mRNA upstream 52146 24530331 ~ 24603824 (+) False LOC120546974
XM_039782343.1 mRNA upstream 137787 24515444 ~ 24518183 (+) True grcc10
XM_039781351.1 mRNA downstream 153436 24810079 ~ 25009457 (+) True lama2
XM_039781642.1 mRNA downstream 581184 25237827 ~ 25261246 (+) True fntb
XM_039781653.1 mRNA downstream 625291 25281934 ~ 25294676 (+) True slc10a1
XM_039782520.1 mRNA downstream 684950 25341593 ~ 25350144 (+) False LOC120547103
XM_039782512.1 mRNA downstream 684996 25341639 ~ 25347485 (+) False LOC120547103
TU253479 other upstream 148157 24506913 ~ 24507813 (+) True G187094
TU253325 other upstream 572866 24079603 ~ 24083104 (+) True G186975
XR_005636956.1 other upstream 1066281 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other upstream 1067456 23578378 ~ 23588514 (+) False nfkbie
TU252499 other upstream 2590381 21985779 ~ 22065589 (+) True G186394
TU253601 other downstream 347376 25004019 ~ 25009407 (+) False lama2
unassigned_transcript_1083 other downstream 563225 25219868 ~ 25219940 (+) True trnat-ugu_3
TU253978 other downstream 1371417 26028060 ~ 26030400 (+) False nudt14
TU254022 other downstream 1620052 26276695 ~ 26281368 (+) False gareml
TU254081 other downstream 1789007 26445650 ~ 26452304 (+) False tfap2b

Expression Profile